Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1528 and EX28DRAFT_1529 overlap by 17 nucleotides EX28DRAFT_1529 and EX28DRAFT_1530 are separated by 287 nucleotides EX28DRAFT_1530 and EX28DRAFT_1531 are separated by 45 nucleotides EX28DRAFT_1531 and EX28DRAFT_1532 are separated by 143 nucleotides
EX28DRAFT_1528: EX28DRAFT_1528 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,543,420 to 1,544,682
_1528
EX28DRAFT_1529: EX28DRAFT_1529 - Peptidase S24-like, at 1,544,666 to 1,545,100
_1529
EX28DRAFT_1530: EX28DRAFT_1530 - hypothetical protein, at 1,545,388 to 1,545,588
_1530
EX28DRAFT_1531: EX28DRAFT_1531 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 1,545,634 to 1,546,500
_1531
EX28DRAFT_1532: EX28DRAFT_1532 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 1,546,644 to 1,548,305
_1532
Position (kb)
1545
1546
1547 Strain fitness (log2 ratio)
-1
0
1
2 at 1544.658 kb on + strand at 1544.686 kb on + strand at 1544.686 kb on + strand at 1544.687 kb on - strand at 1544.804 kb on + strand, within EX28DRAFT_1529 at 1545.003 kb on + strand, within EX28DRAFT_1529 at 1545.003 kb on + strand, within EX28DRAFT_1529 at 1545.003 kb on + strand, within EX28DRAFT_1529 at 1545.004 kb on - strand, within EX28DRAFT_1529 at 1545.004 kb on - strand, within EX28DRAFT_1529 at 1545.126 kb on + strand at 1545.216 kb on - strand at 1545.258 kb on + strand at 1545.301 kb on + strand at 1545.491 kb on - strand, within EX28DRAFT_1530 at 1545.519 kb on + strand, within EX28DRAFT_1530 at 1545.630 kb on - strand at 1545.630 kb on - strand at 1545.846 kb on + strand, within EX28DRAFT_1531 at 1545.875 kb on + strand, within EX28DRAFT_1531 at 1545.876 kb on - strand, within EX28DRAFT_1531 at 1545.876 kb on - strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.938 kb on + strand, within EX28DRAFT_1531 at 1545.939 kb on - strand, within EX28DRAFT_1531 at 1545.939 kb on - strand, within EX28DRAFT_1531 at 1546.042 kb on + strand, within EX28DRAFT_1531 at 1546.327 kb on - strand, within EX28DRAFT_1531 at 1546.436 kb on + strand at 1546.473 kb on - strand at 1546.486 kb on - strand at 1546.558 kb on + strand at 1546.574 kb on - strand at 1546.577 kb on + strand at 1546.578 kb on - strand at 1546.578 kb on - strand at 1546.591 kb on + strand at 1546.602 kb on - strand at 1546.604 kb on + strand at 1546.612 kb on + strand at 1546.676 kb on + strand at 1546.693 kb on + strand at 1546.693 kb on + strand at 1546.694 kb on - strand at 1546.732 kb on - strand at 1546.732 kb on - strand at 1546.757 kb on + strand at 1547.085 kb on + strand, within EX28DRAFT_1532 at 1547.086 kb on - strand, within EX28DRAFT_1532 at 1547.143 kb on - strand, within EX28DRAFT_1532 at 1547.143 kb on - strand, within EX28DRAFT_1532 at 1547.327 kb on + strand, within EX28DRAFT_1532 at 1547.369 kb on + strand, within EX28DRAFT_1532 at 1547.462 kb on + strand, within EX28DRAFT_1532
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,544,658 + -0.2 1,544,686 + +0.3 1,544,686 + +0.1 1,544,687 - -0.4 1,544,804 + EX28DRAFT_1529 0.32 +0.2 1,545,003 + EX28DRAFT_1529 0.77 -1.5 1,545,003 + EX28DRAFT_1529 0.77 +0.3 1,545,003 + EX28DRAFT_1529 0.77 +0.1 1,545,004 - EX28DRAFT_1529 0.78 -0.2 1,545,004 - EX28DRAFT_1529 0.78 -0.3 1,545,126 + -0.3 1,545,216 - +0.7 1,545,258 + -1.6 1,545,301 + -0.8 1,545,491 - EX28DRAFT_1530 0.51 +0.6 1,545,519 + EX28DRAFT_1530 0.65 -0.2 1,545,630 - +0.5 1,545,630 - -0.4 1,545,846 + EX28DRAFT_1531 0.24 +1.7 1,545,875 + EX28DRAFT_1531 0.28 -0.2 1,545,876 - EX28DRAFT_1531 0.28 +1.5 1,545,876 - EX28DRAFT_1531 0.28 +0.5 1,545,938 + EX28DRAFT_1531 0.35 +0.5 1,545,938 + EX28DRAFT_1531 0.35 +0.1 1,545,938 + EX28DRAFT_1531 0.35 -0.9 1,545,938 + EX28DRAFT_1531 0.35 -0.2 1,545,938 + EX28DRAFT_1531 0.35 -0.0 1,545,939 - EX28DRAFT_1531 0.35 +0.3 1,545,939 - EX28DRAFT_1531 0.35 -0.0 1,546,042 + EX28DRAFT_1531 0.47 +0.5 1,546,327 - EX28DRAFT_1531 0.80 +0.6 1,546,436 + -0.2 1,546,473 - -0.3 1,546,486 - +0.3 1,546,558 + +0.2 1,546,574 - +0.9 1,546,577 + -0.9 1,546,578 - +0.9 1,546,578 - -0.4 1,546,591 + -1.7 1,546,602 - -0.4 1,546,604 + -1.3 1,546,612 + +0.5 1,546,676 + +1.8 1,546,693 + +0.0 1,546,693 + -0.4 1,546,694 - -0.6 1,546,732 - +0.6 1,546,732 - -0.1 1,546,757 + -0.0 1,547,085 + EX28DRAFT_1532 0.27 +0.1 1,547,086 - EX28DRAFT_1532 0.27 +0.4 1,547,143 - EX28DRAFT_1532 0.30 -1.6 1,547,143 - EX28DRAFT_1532 0.30 -1.1 1,547,327 + EX28DRAFT_1532 0.41 -0.2 1,547,369 + EX28DRAFT_1532 0.44 -0.7 1,547,462 + EX28DRAFT_1532 0.49 +0.6
Or see this region's nucleotide sequence