Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1496 and EX28DRAFT_1497 overlap by 11 nucleotides EX28DRAFT_1497 and EX28DRAFT_1498 are separated by 172 nucleotides EX28DRAFT_1498 and EX28DRAFT_1499 are separated by 214 nucleotides
EX28DRAFT_1496: EX28DRAFT_1496 - Amino acid transporters, at 1,510,811 to 1,512,202
_1496
EX28DRAFT_1497: EX28DRAFT_1497 - hypothetical protein, at 1,512,192 to 1,512,386
_1497
EX28DRAFT_1498: EX28DRAFT_1498 - Glutamine synthetase, at 1,512,559 to 1,513,977
_1498
EX28DRAFT_1499: EX28DRAFT_1499 - Predicted glutamine amidotransferases, at 1,514,192 to 1,514,956
_1499
Position (kb)
1512
1513
1514 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1511.581 kb on + strand, within EX28DRAFT_1496 at 1511.582 kb on - strand, within EX28DRAFT_1496 at 1511.582 kb on - strand, within EX28DRAFT_1496 at 1511.696 kb on - strand, within EX28DRAFT_1496 at 1511.744 kb on - strand, within EX28DRAFT_1496 at 1511.832 kb on + strand, within EX28DRAFT_1496 at 1511.833 kb on - strand, within EX28DRAFT_1496 at 1511.875 kb on - strand, within EX28DRAFT_1496 at 1511.937 kb on + strand, within EX28DRAFT_1496 at 1511.938 kb on - strand, within EX28DRAFT_1496 at 1512.027 kb on + strand, within EX28DRAFT_1496 at 1512.028 kb on - strand, within EX28DRAFT_1496 at 1512.028 kb on - strand, within EX28DRAFT_1496 at 1512.028 kb on - strand, within EX28DRAFT_1496 at 1512.028 kb on - strand, within EX28DRAFT_1496 at 1512.077 kb on - strand at 1512.077 kb on - strand at 1512.102 kb on + strand at 1512.193 kb on + strand at 1512.302 kb on - strand, within EX28DRAFT_1497 at 1512.368 kb on - strand at 1512.392 kb on - strand at 1512.485 kb on - strand at 1512.515 kb on + strand at 1512.515 kb on + strand at 1512.515 kb on + strand at 1512.515 kb on + strand at 1512.515 kb on + strand at 1512.515 kb on + strand at 1512.516 kb on - strand at 1512.516 kb on - strand at 1512.519 kb on + strand at 1512.519 kb on + strand at 1512.959 kb on + strand, within EX28DRAFT_1498 at 1512.959 kb on + strand, within EX28DRAFT_1498 at 1513.191 kb on + strand, within EX28DRAFT_1498 at 1513.191 kb on + strand, within EX28DRAFT_1498 at 1513.192 kb on - strand, within EX28DRAFT_1498 at 1513.192 kb on - strand, within EX28DRAFT_1498 at 1513.192 kb on - strand, within EX28DRAFT_1498 at 1513.631 kb on + strand, within EX28DRAFT_1498 at 1513.772 kb on + strand, within EX28DRAFT_1498 at 1513.772 kb on + strand, within EX28DRAFT_1498 at 1513.773 kb on - strand, within EX28DRAFT_1498 at 1513.885 kb on + strand at 1513.889 kb on + strand at 1513.890 kb on - strand at 1513.982 kb on + strand at 1513.982 kb on + strand at 1513.983 kb on - strand at 1514.126 kb on - strand at 1514.218 kb on + strand at 1514.248 kb on + strand at 1514.314 kb on - strand, within EX28DRAFT_1499 at 1514.317 kb on + strand, within EX28DRAFT_1499 at 1514.318 kb on - strand, within EX28DRAFT_1499 at 1514.352 kb on + strand, within EX28DRAFT_1499 at 1514.353 kb on - strand, within EX28DRAFT_1499 at 1514.388 kb on - strand, within EX28DRAFT_1499 at 1514.426 kb on + strand, within EX28DRAFT_1499 at 1514.643 kb on + strand, within EX28DRAFT_1499 at 1514.643 kb on + strand, within EX28DRAFT_1499 at 1514.700 kb on + strand, within EX28DRAFT_1499 at 1514.760 kb on + strand, within EX28DRAFT_1499 at 1514.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,511,581 + EX28DRAFT_1496 0.55 -0.1 1,511,582 - EX28DRAFT_1496 0.55 +0.3 1,511,582 - EX28DRAFT_1496 0.55 +1.8 1,511,696 - EX28DRAFT_1496 0.64 +0.5 1,511,744 - EX28DRAFT_1496 0.67 -0.4 1,511,832 + EX28DRAFT_1496 0.73 +0.5 1,511,833 - EX28DRAFT_1496 0.73 +0.4 1,511,875 - EX28DRAFT_1496 0.76 +0.1 1,511,937 + EX28DRAFT_1496 0.81 -0.1 1,511,938 - EX28DRAFT_1496 0.81 +0.2 1,512,027 + EX28DRAFT_1496 0.87 +0.1 1,512,028 - EX28DRAFT_1496 0.87 -0.0 1,512,028 - EX28DRAFT_1496 0.87 -0.2 1,512,028 - EX28DRAFT_1496 0.87 -0.3 1,512,028 - EX28DRAFT_1496 0.87 -0.8 1,512,077 - +0.2 1,512,077 - +0.0 1,512,102 + +1.0 1,512,193 + +0.3 1,512,302 - EX28DRAFT_1497 0.56 +0.5 1,512,368 - +0.1 1,512,392 - +0.4 1,512,485 - -1.2 1,512,515 + +0.2 1,512,515 + -0.4 1,512,515 + +0.4 1,512,515 + +0.5 1,512,515 + +0.2 1,512,515 + -0.3 1,512,516 - -0.9 1,512,516 - -0.8 1,512,519 + +0.4 1,512,519 + +0.1 1,512,959 + EX28DRAFT_1498 0.28 +0.3 1,512,959 + EX28DRAFT_1498 0.28 -0.2 1,513,191 + EX28DRAFT_1498 0.45 -0.1 1,513,191 + EX28DRAFT_1498 0.45 -0.9 1,513,192 - EX28DRAFT_1498 0.45 +0.1 1,513,192 - EX28DRAFT_1498 0.45 -2.5 1,513,192 - EX28DRAFT_1498 0.45 -0.2 1,513,631 + EX28DRAFT_1498 0.76 +1.2 1,513,772 + EX28DRAFT_1498 0.85 +1.9 1,513,772 + EX28DRAFT_1498 0.85 +0.1 1,513,773 - EX28DRAFT_1498 0.86 +0.5 1,513,885 + -0.1 1,513,889 + +2.0 1,513,890 - +0.3 1,513,982 + +0.3 1,513,982 + -0.3 1,513,983 - +1.7 1,514,126 - -0.3 1,514,218 + +0.5 1,514,248 + +2.4 1,514,314 - EX28DRAFT_1499 0.16 +0.4 1,514,317 + EX28DRAFT_1499 0.16 +0.7 1,514,318 - EX28DRAFT_1499 0.16 -0.6 1,514,352 + EX28DRAFT_1499 0.21 -0.8 1,514,353 - EX28DRAFT_1499 0.21 -0.6 1,514,388 - EX28DRAFT_1499 0.26 -0.1 1,514,426 + EX28DRAFT_1499 0.31 +0.0 1,514,643 + EX28DRAFT_1499 0.59 -0.5 1,514,643 + EX28DRAFT_1499 0.59 +0.3 1,514,700 + EX28DRAFT_1499 0.66 +0.5 1,514,760 + EX28DRAFT_1499 0.74 +0.2 1,514,962 - +0.1
Or see this region's nucleotide sequence