Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1477 and EX28DRAFT_1478 are separated by 701 nucleotides EX28DRAFT_1478 and EX28DRAFT_1479 are separated by 210 nucleotides EX28DRAFT_1479 and EX28DRAFT_1480 are separated by 88 nucleotides
EX28DRAFT_1477: EX28DRAFT_1477 - Uncharacterized protein conserved in bacteria, at 1,492,369 to 1,492,686
_1477
EX28DRAFT_1478: EX28DRAFT_1478 - Pili and flagellar-assembly chaperone, PapD N-terminal domain, at 1,493,388 to 1,493,933
_1478
EX28DRAFT_1479: EX28DRAFT_1479 - hypothetical protein, at 1,494,144 to 1,494,767
_1479
EX28DRAFT_1480: EX28DRAFT_1480 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,494,856 to 1,495,467
_1480
Position (kb)
1493
1494 Strain fitness (log2 ratio)
-1
0
1 at 1492.399 kb on - strand at 1492.578 kb on + strand, within EX28DRAFT_1477 at 1492.854 kb on + strand at 1492.862 kb on - strand at 1492.876 kb on - strand at 1492.879 kb on + strand at 1492.891 kb on + strand at 1492.892 kb on - strand at 1492.919 kb on + strand at 1492.923 kb on + strand at 1492.965 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.990 kb on - strand at 1492.993 kb on - strand at 1493.002 kb on + strand at 1493.003 kb on - strand at 1493.159 kb on - strand at 1493.679 kb on - strand, within EX28DRAFT_1478 at 1493.730 kb on - strand, within EX28DRAFT_1478 at 1493.748 kb on - strand, within EX28DRAFT_1478 at 1493.907 kb on - strand at 1493.909 kb on + strand at 1493.910 kb on - strand at 1493.931 kb on + strand at 1494.014 kb on - strand at 1494.306 kb on + strand, within EX28DRAFT_1479 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.500 kb on + strand, within EX28DRAFT_1479 at 1494.505 kb on - strand, within EX28DRAFT_1479 at 1494.694 kb on + strand, within EX28DRAFT_1479 at 1494.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,492,399 - -1.3 1,492,578 + EX28DRAFT_1477 0.66 -0.3 1,492,854 + +0.3 1,492,862 - +0.8 1,492,876 - +0.6 1,492,879 + +0.1 1,492,891 + -1.2 1,492,892 - -0.1 1,492,919 + +0.1 1,492,923 + -0.9 1,492,965 - -1.1 1,492,990 - -0.5 1,492,990 - +1.0 1,492,990 - +0.8 1,492,990 - +0.1 1,492,993 - -0.9 1,493,002 + +0.1 1,493,003 - +0.7 1,493,159 - -0.6 1,493,679 - EX28DRAFT_1478 0.53 -0.9 1,493,730 - EX28DRAFT_1478 0.63 +0.9 1,493,748 - EX28DRAFT_1478 0.66 -0.1 1,493,907 - +0.0 1,493,909 + -0.4 1,493,910 - +0.4 1,493,931 + -0.1 1,494,014 - -0.6 1,494,306 + EX28DRAFT_1479 0.26 -1.0 1,494,499 - EX28DRAFT_1479 0.57 -0.2 1,494,499 - EX28DRAFT_1479 0.57 -0.2 1,494,500 + EX28DRAFT_1479 0.57 -0.5 1,494,505 - EX28DRAFT_1479 0.58 -0.1 1,494,694 + EX28DRAFT_1479 0.88 +0.8 1,494,815 + -0.2
Or see this region's nucleotide sequence