Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1361 and EX28DRAFT_1362 are separated by 10 nucleotides EX28DRAFT_1362 and EX28DRAFT_1363 are separated by 213 nucleotides EX28DRAFT_1363 and EX28DRAFT_1364 are separated by 23 nucleotides
EX28DRAFT_1361: EX28DRAFT_1361 - hypothetical protein, at 1,379,154 to 1,380,269
_1361
EX28DRAFT_1362: EX28DRAFT_1362 - hypothetical protein, at 1,380,280 to 1,380,963
_1362
EX28DRAFT_1363: EX28DRAFT_1363 - Domain of unknown function (DUF1852), at 1,381,177 to 1,382,151
_1363
EX28DRAFT_1364: EX28DRAFT_1364 - Methionine synthase II (cobalamin-independent), at 1,382,175 to 1,383,203
_1364
Position (kb)
1381
1382
1383 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1380.207 kb on - strand at 1380.219 kb on + strand at 1380.257 kb on - strand at 1380.257 kb on - strand at 1380.275 kb on + strand at 1380.296 kb on + strand at 1380.352 kb on - strand, within EX28DRAFT_1362 at 1380.352 kb on - strand, within EX28DRAFT_1362 at 1380.461 kb on + strand, within EX28DRAFT_1362 at 1380.484 kb on - strand, within EX28DRAFT_1362 at 1380.489 kb on + strand, within EX28DRAFT_1362 at 1380.510 kb on + strand, within EX28DRAFT_1362 at 1380.510 kb on + strand, within EX28DRAFT_1362 at 1380.546 kb on - strand, within EX28DRAFT_1362 at 1380.608 kb on - strand, within EX28DRAFT_1362 at 1380.647 kb on - strand, within EX28DRAFT_1362 at 1380.726 kb on + strand, within EX28DRAFT_1362 at 1380.749 kb on - strand, within EX28DRAFT_1362 at 1380.749 kb on - strand, within EX28DRAFT_1362 at 1380.767 kb on + strand, within EX28DRAFT_1362 at 1380.785 kb on - strand, within EX28DRAFT_1362 at 1380.813 kb on - strand, within EX28DRAFT_1362 at 1380.831 kb on + strand, within EX28DRAFT_1362 at 1380.831 kb on + strand, within EX28DRAFT_1362 at 1380.832 kb on - strand, within EX28DRAFT_1362 at 1380.832 kb on - strand, within EX28DRAFT_1362 at 1380.882 kb on + strand, within EX28DRAFT_1362 at 1380.898 kb on + strand at 1380.898 kb on + strand at 1380.918 kb on + strand at 1380.918 kb on + strand at 1380.951 kb on + strand at 1381.044 kb on - strand at 1381.128 kb on + strand at 1381.195 kb on + strand at 1381.196 kb on - strand at 1381.196 kb on - strand at 1381.196 kb on - strand at 1381.196 kb on - strand at 1381.197 kb on + strand at 1381.197 kb on + strand at 1381.197 kb on + strand at 1381.228 kb on + strand at 1381.228 kb on + strand at 1381.311 kb on + strand, within EX28DRAFT_1363 at 1381.513 kb on - strand, within EX28DRAFT_1363 at 1381.525 kb on + strand, within EX28DRAFT_1363 at 1381.789 kb on + strand, within EX28DRAFT_1363 at 1381.985 kb on - strand, within EX28DRAFT_1363 at 1382.036 kb on - strand, within EX28DRAFT_1363 at 1382.092 kb on + strand at 1382.093 kb on - strand at 1382.140 kb on + strand at 1382.140 kb on + strand at 1382.141 kb on - strand at 1382.141 kb on - strand at 1382.141 kb on - strand at 1382.141 kb on - strand at 1382.150 kb on - strand at 1382.171 kb on + strand at 1382.171 kb on + strand at 1382.171 kb on + strand at 1382.172 kb on - strand at 1382.393 kb on + strand, within EX28DRAFT_1364 at 1382.394 kb on - strand, within EX28DRAFT_1364 at 1382.610 kb on + strand, within EX28DRAFT_1364 at 1382.613 kb on - strand, within EX28DRAFT_1364 at 1382.613 kb on - strand, within EX28DRAFT_1364 at 1382.674 kb on + strand, within EX28DRAFT_1364 at 1382.921 kb on + strand, within EX28DRAFT_1364 at 1382.921 kb on + strand, within EX28DRAFT_1364 at 1382.982 kb on - strand, within EX28DRAFT_1364 at 1383.059 kb on + strand, within EX28DRAFT_1364
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,380,207 - +0.3 1,380,219 + +0.0 1,380,257 - -0.1 1,380,257 - -0.0 1,380,275 + -0.2 1,380,296 + -0.1 1,380,352 - EX28DRAFT_1362 0.11 -0.6 1,380,352 - EX28DRAFT_1362 0.11 -1.4 1,380,461 + EX28DRAFT_1362 0.26 +1.4 1,380,484 - EX28DRAFT_1362 0.30 -0.0 1,380,489 + EX28DRAFT_1362 0.31 +1.1 1,380,510 + EX28DRAFT_1362 0.34 -0.2 1,380,510 + EX28DRAFT_1362 0.34 +0.3 1,380,546 - EX28DRAFT_1362 0.39 +0.1 1,380,608 - EX28DRAFT_1362 0.48 +0.4 1,380,647 - EX28DRAFT_1362 0.54 -0.1 1,380,726 + EX28DRAFT_1362 0.65 +0.8 1,380,749 - EX28DRAFT_1362 0.69 -0.5 1,380,749 - EX28DRAFT_1362 0.69 +0.3 1,380,767 + EX28DRAFT_1362 0.71 -0.2 1,380,785 - EX28DRAFT_1362 0.74 +0.2 1,380,813 - EX28DRAFT_1362 0.78 +0.8 1,380,831 + EX28DRAFT_1362 0.81 +1.1 1,380,831 + EX28DRAFT_1362 0.81 -0.1 1,380,832 - EX28DRAFT_1362 0.81 +0.4 1,380,832 - EX28DRAFT_1362 0.81 +0.7 1,380,882 + EX28DRAFT_1362 0.88 +0.4 1,380,898 + -1.5 1,380,898 + +0.0 1,380,918 + -0.5 1,380,918 + +0.6 1,380,951 + -0.4 1,381,044 - +0.2 1,381,128 + +0.4 1,381,195 + -0.2 1,381,196 - -0.7 1,381,196 - +0.2 1,381,196 - -0.1 1,381,196 - -1.3 1,381,197 + -0.5 1,381,197 + -0.2 1,381,197 + -1.7 1,381,228 + +0.9 1,381,228 + -0.4 1,381,311 + EX28DRAFT_1363 0.14 -1.2 1,381,513 - EX28DRAFT_1363 0.34 -0.5 1,381,525 + EX28DRAFT_1363 0.36 +0.1 1,381,789 + EX28DRAFT_1363 0.63 +0.2 1,381,985 - EX28DRAFT_1363 0.83 -0.6 1,382,036 - EX28DRAFT_1363 0.88 -2.1 1,382,092 + -0.9 1,382,093 - +0.8 1,382,140 + -2.5 1,382,140 + -0.5 1,382,141 - -0.3 1,382,141 - -1.6 1,382,141 - -2.6 1,382,141 - -0.7 1,382,150 - -1.9 1,382,171 + -0.4 1,382,171 + -1.8 1,382,171 + -1.3 1,382,172 - -1.3 1,382,393 + EX28DRAFT_1364 0.21 -0.3 1,382,394 - EX28DRAFT_1364 0.21 +0.2 1,382,610 + EX28DRAFT_1364 0.42 -1.3 1,382,613 - EX28DRAFT_1364 0.43 +0.1 1,382,613 - EX28DRAFT_1364 0.43 -0.2 1,382,674 + EX28DRAFT_1364 0.48 +0.0 1,382,921 + EX28DRAFT_1364 0.72 -3.1 1,382,921 + EX28DRAFT_1364 0.72 +2.2 1,382,982 - EX28DRAFT_1364 0.78 -1.1 1,383,059 + EX28DRAFT_1364 0.86 -0.3
Or see this region's nucleotide sequence