Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1348 and EX28DRAFT_1349 are separated by 45 nucleotides EX28DRAFT_1349 and EX28DRAFT_1350 are separated by 189 nucleotides EX28DRAFT_1350 and EX28DRAFT_1351 are separated by 53 nucleotides
EX28DRAFT_1348: EX28DRAFT_1348 - Predicted dehydrogenases and related proteins, at 1,362,316 to 1,363,383
_1348
EX28DRAFT_1349: EX28DRAFT_1349 - Cytochrome B561, at 1,363,429 to 1,363,959
_1349
EX28DRAFT_1350: EX28DRAFT_1350 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 1,364,149 to 1,365,150
_1350
EX28DRAFT_1351: EX28DRAFT_1351 - Uncharacterized conserved protein, at 1,365,204 to 1,365,998
_1351
Position (kb)
1364
1365
1366 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1363.216 kb on + strand, within EX28DRAFT_1348 at 1363.219 kb on + strand, within EX28DRAFT_1348 at 1363.219 kb on + strand, within EX28DRAFT_1348 at 1363.219 kb on + strand, within EX28DRAFT_1348 at 1363.220 kb on - strand, within EX28DRAFT_1348 at 1363.220 kb on - strand, within EX28DRAFT_1348 at 1363.230 kb on - strand, within EX28DRAFT_1348 at 1363.381 kb on + strand at 1363.430 kb on + strand at 1363.467 kb on + strand at 1363.467 kb on + strand at 1363.481 kb on + strand at 1363.482 kb on - strand, within EX28DRAFT_1349 at 1363.482 kb on - strand, within EX28DRAFT_1349 at 1363.482 kb on - strand, within EX28DRAFT_1349 at 1363.482 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.644 kb on - strand, within EX28DRAFT_1349 at 1363.678 kb on - strand, within EX28DRAFT_1349 at 1363.689 kb on - strand, within EX28DRAFT_1349 at 1363.834 kb on - strand, within EX28DRAFT_1349 at 1363.834 kb on - strand, within EX28DRAFT_1349 at 1363.890 kb on - strand, within EX28DRAFT_1349 at 1363.890 kb on - strand, within EX28DRAFT_1349 at 1363.944 kb on + strand at 1363.945 kb on - strand at 1363.945 kb on - strand at 1363.946 kb on + strand at 1363.996 kb on + strand at 1364.136 kb on - strand at 1364.195 kb on + strand at 1364.299 kb on + strand, within EX28DRAFT_1350 at 1364.299 kb on + strand, within EX28DRAFT_1350 at 1364.299 kb on + strand, within EX28DRAFT_1350 at 1364.299 kb on + strand, within EX28DRAFT_1350 at 1364.417 kb on + strand, within EX28DRAFT_1350 at 1364.417 kb on + strand, within EX28DRAFT_1350 at 1364.422 kb on - strand, within EX28DRAFT_1350 at 1364.446 kb on + strand, within EX28DRAFT_1350 at 1364.448 kb on + strand, within EX28DRAFT_1350 at 1364.580 kb on + strand, within EX28DRAFT_1350 at 1364.580 kb on + strand, within EX28DRAFT_1350 at 1364.581 kb on - strand, within EX28DRAFT_1350 at 1364.581 kb on - strand, within EX28DRAFT_1350 at 1364.684 kb on - strand, within EX28DRAFT_1350 at 1364.758 kb on - strand, within EX28DRAFT_1350 at 1364.758 kb on - strand, within EX28DRAFT_1350 at 1364.949 kb on + strand, within EX28DRAFT_1350 at 1364.949 kb on + strand, within EX28DRAFT_1350 at 1364.950 kb on - strand, within EX28DRAFT_1350 at 1364.962 kb on + strand, within EX28DRAFT_1350 at 1365.097 kb on + strand at 1365.206 kb on - strand at 1365.211 kb on - strand at 1365.627 kb on - strand, within EX28DRAFT_1351 at 1365.760 kb on + strand, within EX28DRAFT_1351 at 1365.761 kb on - strand, within EX28DRAFT_1351 at 1365.945 kb on - strand at 1366.149 kb on + strand at 1366.149 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,363,216 + EX28DRAFT_1348 0.84 +0.0 1,363,219 + EX28DRAFT_1348 0.85 -0.8 1,363,219 + EX28DRAFT_1348 0.85 -2.8 1,363,219 + EX28DRAFT_1348 0.85 -0.2 1,363,220 - EX28DRAFT_1348 0.85 -1.0 1,363,220 - EX28DRAFT_1348 0.85 +1.3 1,363,230 - EX28DRAFT_1348 0.86 +0.8 1,363,381 + +0.3 1,363,430 + +0.5 1,363,467 + +0.1 1,363,467 + -0.2 1,363,481 + -0.1 1,363,482 - EX28DRAFT_1349 0.10 +0.0 1,363,482 - EX28DRAFT_1349 0.10 +1.0 1,363,482 - EX28DRAFT_1349 0.10 +0.7 1,363,482 - EX28DRAFT_1349 0.10 -1.2 1,363,644 - EX28DRAFT_1349 0.40 +0.6 1,363,644 - EX28DRAFT_1349 0.40 -0.0 1,363,644 - EX28DRAFT_1349 0.40 +0.1 1,363,644 - EX28DRAFT_1349 0.40 +1.5 1,363,644 - EX28DRAFT_1349 0.40 -0.0 1,363,678 - EX28DRAFT_1349 0.47 +0.1 1,363,689 - EX28DRAFT_1349 0.49 +0.4 1,363,834 - EX28DRAFT_1349 0.76 +0.6 1,363,834 - EX28DRAFT_1349 0.76 +0.5 1,363,890 - EX28DRAFT_1349 0.87 -1.0 1,363,890 - EX28DRAFT_1349 0.87 +0.1 1,363,944 + +0.5 1,363,945 - -0.5 1,363,945 - -0.0 1,363,946 + -0.1 1,363,996 + -0.6 1,364,136 - -0.6 1,364,195 + +0.8 1,364,299 + EX28DRAFT_1350 0.15 -0.4 1,364,299 + EX28DRAFT_1350 0.15 +0.1 1,364,299 + EX28DRAFT_1350 0.15 -0.3 1,364,299 + EX28DRAFT_1350 0.15 -1.9 1,364,417 + EX28DRAFT_1350 0.27 -0.1 1,364,417 + EX28DRAFT_1350 0.27 +0.3 1,364,422 - EX28DRAFT_1350 0.27 -0.6 1,364,446 + EX28DRAFT_1350 0.30 +0.3 1,364,448 + EX28DRAFT_1350 0.30 -0.3 1,364,580 + EX28DRAFT_1350 0.43 +0.3 1,364,580 + EX28DRAFT_1350 0.43 -0.2 1,364,581 - EX28DRAFT_1350 0.43 -0.2 1,364,581 - EX28DRAFT_1350 0.43 -0.3 1,364,684 - EX28DRAFT_1350 0.53 -1.8 1,364,758 - EX28DRAFT_1350 0.61 +0.4 1,364,758 - EX28DRAFT_1350 0.61 -0.1 1,364,949 + EX28DRAFT_1350 0.80 -0.7 1,364,949 + EX28DRAFT_1350 0.80 -0.3 1,364,950 - EX28DRAFT_1350 0.80 -0.6 1,364,962 + EX28DRAFT_1350 0.81 +0.3 1,365,097 + +0.2 1,365,206 - -1.8 1,365,211 - -0.2 1,365,627 - EX28DRAFT_1351 0.53 +0.3 1,365,760 + EX28DRAFT_1351 0.70 +1.8 1,365,761 - EX28DRAFT_1351 0.70 +0.6 1,365,945 - -0.0 1,366,149 + -2.9 1,366,149 + +1.1
Or see this region's nucleotide sequence