Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1341 and EX28DRAFT_1342 are separated by 209 nucleotides EX28DRAFT_1342 and EX28DRAFT_1343 are separated by 35 nucleotides
EX28DRAFT_1341: EX28DRAFT_1341 - FOG: EAL domain, at 1,335,167 to 1,336,630
_1341
EX28DRAFT_1342: EX28DRAFT_1342 - hypothetical protein, at 1,336,840 to 1,337,790
_1342
EX28DRAFT_1343: EX28DRAFT_1343 - type I secretion membrane fusion protein, HlyD family, at 1,337,826 to 1,339,001
_1343
Position (kb)
1336
1337
1338 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1335.885 kb on + strand, within EX28DRAFT_1341 at 1336.272 kb on + strand, within EX28DRAFT_1341 at 1336.307 kb on + strand, within EX28DRAFT_1341 at 1336.307 kb on + strand, within EX28DRAFT_1341 at 1336.333 kb on - strand, within EX28DRAFT_1341 at 1336.505 kb on - strand at 1336.517 kb on + strand at 1336.695 kb on + strand at 1336.792 kb on - strand at 1337.139 kb on - strand, within EX28DRAFT_1342 at 1337.668 kb on + strand, within EX28DRAFT_1342 at 1337.719 kb on + strand at 1337.731 kb on + strand at 1337.732 kb on - strand at 1337.732 kb on - strand at 1337.904 kb on - strand at 1337.907 kb on - strand at 1337.957 kb on + strand, within EX28DRAFT_1343 at 1337.989 kb on + strand, within EX28DRAFT_1343 at 1337.989 kb on + strand, within EX28DRAFT_1343 at 1337.990 kb on - strand, within EX28DRAFT_1343 at 1338.001 kb on + strand, within EX28DRAFT_1343 at 1338.001 kb on + strand, within EX28DRAFT_1343 at 1338.001 kb on + strand, within EX28DRAFT_1343 at 1338.002 kb on - strand, within EX28DRAFT_1343 at 1338.004 kb on + strand, within EX28DRAFT_1343 at 1338.005 kb on - strand, within EX28DRAFT_1343 at 1338.279 kb on - strand, within EX28DRAFT_1343 at 1338.379 kb on + strand, within EX28DRAFT_1343 at 1338.382 kb on + strand, within EX28DRAFT_1343
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,335,885 + EX28DRAFT_1341 0.49 -0.7 1,336,272 + EX28DRAFT_1341 0.75 +0.0 1,336,307 + EX28DRAFT_1341 0.78 -0.0 1,336,307 + EX28DRAFT_1341 0.78 +0.5 1,336,333 - EX28DRAFT_1341 0.80 -1.5 1,336,505 - -0.2 1,336,517 + -0.3 1,336,695 + -0.8 1,336,792 - +0.3 1,337,139 - EX28DRAFT_1342 0.31 -2.8 1,337,668 + EX28DRAFT_1342 0.87 -1.0 1,337,719 + -0.3 1,337,731 + +0.0 1,337,732 - -0.4 1,337,732 - +0.8 1,337,904 - +0.4 1,337,907 - -0.3 1,337,957 + EX28DRAFT_1343 0.11 -1.9 1,337,989 + EX28DRAFT_1343 0.14 +0.3 1,337,989 + EX28DRAFT_1343 0.14 +0.2 1,337,990 - EX28DRAFT_1343 0.14 -0.3 1,338,001 + EX28DRAFT_1343 0.15 -1.0 1,338,001 + EX28DRAFT_1343 0.15 +0.9 1,338,001 + EX28DRAFT_1343 0.15 -1.6 1,338,002 - EX28DRAFT_1343 0.15 -0.5 1,338,004 + EX28DRAFT_1343 0.15 +0.2 1,338,005 - EX28DRAFT_1343 0.15 +1.9 1,338,279 - EX28DRAFT_1343 0.39 -1.3 1,338,379 + EX28DRAFT_1343 0.47 +0.2 1,338,382 + EX28DRAFT_1343 0.47 +0.5
Or see this region's nucleotide sequence