Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1330

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1329 and EX28DRAFT_1330 are separated by 117 nucleotidesEX28DRAFT_1330 and EX28DRAFT_1331 are separated by 20 nucleotidesEX28DRAFT_1331 and EX28DRAFT_1332 are separated by 180 nucleotidesEX28DRAFT_1332 and EX28DRAFT_1333 are separated by 62 nucleotides EX28DRAFT_1329: EX28DRAFT_1329 - Site-specific recombinase XerD, at 1,325,096 to 1,326,376 _1329 EX28DRAFT_1330: EX28DRAFT_1330 - hypothetical protein, at 1,326,494 to 1,326,688 _1330 EX28DRAFT_1331: EX28DRAFT_1331 - hypothetical protein, at 1,326,709 to 1,327,116 _1331 EX28DRAFT_1332: EX28DRAFT_1332 - Phage minor tail protein, at 1,327,297 to 1,327,511 _1332 EX28DRAFT_1333: EX28DRAFT_1333 - hypothetical protein, at 1,327,574 to 1,327,998 _1333 Position (kb) 1326 1327Strain fitness (log2 ratio) -2 -1 0 1at 1325.910 kb on + strand, within EX28DRAFT_1329at 1325.911 kb on - strand, within EX28DRAFT_1329at 1325.954 kb on + strand, within EX28DRAFT_1329at 1325.954 kb on + strand, within EX28DRAFT_1329at 1325.954 kb on + strand, within EX28DRAFT_1329at 1325.955 kb on - strand, within EX28DRAFT_1329at 1325.955 kb on - strand, within EX28DRAFT_1329at 1325.955 kb on - strand, within EX28DRAFT_1329at 1326.081 kb on - strand, within EX28DRAFT_1329at 1326.173 kb on + strand, within EX28DRAFT_1329at 1326.173 kb on + strand, within EX28DRAFT_1329at 1326.174 kb on - strand, within EX28DRAFT_1329at 1326.174 kb on - strand, within EX28DRAFT_1329at 1326.309 kb on + strandat 1326.441 kb on - strandat 1326.441 kb on - strandat 1326.441 kb on - strandat 1326.452 kb on - strandat 1326.458 kb on + strandat 1326.463 kb on - strandat 1326.463 kb on - strandat 1326.477 kb on + strandat 1326.497 kb on + strandat 1326.497 kb on + strandat 1326.497 kb on + strandat 1326.497 kb on + strandat 1326.498 kb on - strandat 1326.498 kb on - strandat 1326.539 kb on - strand, within EX28DRAFT_1330at 1326.564 kb on + strand, within EX28DRAFT_1330at 1326.651 kb on - strand, within EX28DRAFT_1330at 1326.694 kb on - strandat 1326.695 kb on + strandat 1326.707 kb on + strandat 1326.765 kb on - strand, within EX28DRAFT_1331at 1326.910 kb on - strand, within EX28DRAFT_1331at 1326.916 kb on - strand, within EX28DRAFT_1331at 1326.936 kb on + strand, within EX28DRAFT_1331at 1326.974 kb on - strand, within EX28DRAFT_1331at 1327.022 kb on + strand, within EX28DRAFT_1331at 1327.024 kb on + strand, within EX28DRAFT_1331at 1327.025 kb on - strand, within EX28DRAFT_1331at 1327.083 kb on + strandat 1327.137 kb on + strandat 1327.151 kb on + strandat 1327.211 kb on + strandat 1327.212 kb on - strandat 1327.213 kb on + strandat 1327.214 kb on - strandat 1327.274 kb on + strandat 1327.275 kb on - strandat 1327.281 kb on + strandat 1327.282 kb on - strandat 1327.443 kb on + strand, within EX28DRAFT_1332at 1327.444 kb on - strand, within EX28DRAFT_1332at 1327.447 kb on + strand, within EX28DRAFT_1332at 1327.451 kb on + strand, within EX28DRAFT_1332at 1327.494 kb on - strandat 1327.597 kb on + strandat 1327.615 kb on + strandat 1327.615 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,325,910 + EX28DRAFT_1329 0.64 -1.7
1,325,911 - EX28DRAFT_1329 0.64 +0.2
1,325,954 + EX28DRAFT_1329 0.67 +0.1
1,325,954 + EX28DRAFT_1329 0.67 -1.2
1,325,954 + EX28DRAFT_1329 0.67 +0.4
1,325,955 - EX28DRAFT_1329 0.67 -0.7
1,325,955 - EX28DRAFT_1329 0.67 +0.1
1,325,955 - EX28DRAFT_1329 0.67 -0.1
1,326,081 - EX28DRAFT_1329 0.77 -0.2
1,326,173 + EX28DRAFT_1329 0.84 +0.9
1,326,173 + EX28DRAFT_1329 0.84 +1.0
1,326,174 - EX28DRAFT_1329 0.84 +0.6
1,326,174 - EX28DRAFT_1329 0.84 -1.4
1,326,309 + +0.1
1,326,441 - +0.7
1,326,441 - -0.1
1,326,441 - +0.5
1,326,452 - +0.3
1,326,458 + -0.3
1,326,463 - -0.1
1,326,463 - +0.3
1,326,477 + -1.4
1,326,497 + +0.2
1,326,497 + -1.0
1,326,497 + -0.3
1,326,497 + +0.6
1,326,498 - -1.6
1,326,498 - -0.3
1,326,539 - EX28DRAFT_1330 0.23 +0.3
1,326,564 + EX28DRAFT_1330 0.36 -0.3
1,326,651 - EX28DRAFT_1330 0.81 +1.6
1,326,694 - +0.2
1,326,695 + -0.6
1,326,707 + -0.1
1,326,765 - EX28DRAFT_1331 0.14 +0.3
1,326,910 - EX28DRAFT_1331 0.49 -2.0
1,326,916 - EX28DRAFT_1331 0.51 +0.7
1,326,936 + EX28DRAFT_1331 0.56 +0.4
1,326,974 - EX28DRAFT_1331 0.65 +0.3
1,327,022 + EX28DRAFT_1331 0.77 +0.6
1,327,024 + EX28DRAFT_1331 0.77 +0.5
1,327,025 - EX28DRAFT_1331 0.77 +0.0
1,327,083 + +0.4
1,327,137 + +0.3
1,327,151 + +0.7
1,327,211 + +1.2
1,327,212 - -0.2
1,327,213 + +0.7
1,327,214 - -0.6
1,327,274 + +1.5
1,327,275 - +0.3
1,327,281 + -1.2
1,327,282 - +0.0
1,327,443 + EX28DRAFT_1332 0.68 -0.3
1,327,444 - EX28DRAFT_1332 0.68 -0.4
1,327,447 + EX28DRAFT_1332 0.70 +0.2
1,327,451 + EX28DRAFT_1332 0.72 +0.2
1,327,494 - +0.6
1,327,597 + +0.2
1,327,615 + -0.7
1,327,615 + -0.5

Or see this region's nucleotide sequence