Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1322

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1320 and EX28DRAFT_1321 are separated by 3 nucleotidesEX28DRAFT_1321 and EX28DRAFT_1322 are separated by 11 nucleotidesEX28DRAFT_1322 and EX28DRAFT_1323 are separated by 11 nucleotidesEX28DRAFT_1323 and EX28DRAFT_1324 overlap by 4 nucleotidesEX28DRAFT_1324 and EX28DRAFT_1325 overlap by 4 nucleotides EX28DRAFT_1320: EX28DRAFT_1320 - DNA polymerase III, epsilon subunit and related 3'-5' exonucleases, at 1,320,534 to 1,321,190 _1320 EX28DRAFT_1321: EX28DRAFT_1321 - hypothetical protein, at 1,321,194 to 1,321,859 _1321 EX28DRAFT_1322: EX28DRAFT_1322 - hypothetical protein, at 1,321,871 to 1,322,581 _1322 EX28DRAFT_1323: EX28DRAFT_1323 - Protein of unknown function (DUF1317), at 1,322,593 to 1,322,745 _1323 EX28DRAFT_1324: EX28DRAFT_1324 - Methyltransferase domain, at 1,322,742 to 1,323,224 _1324 EX28DRAFT_1325: EX28DRAFT_1325 - Transcriptional activator, adenine-specific DNA methyltransferase, at 1,323,221 to 1,323,880 _1325 Position (kb) 1321 1322 1323Strain fitness (log2 ratio) -1 0 1 2at 1320.882 kb on + strand, within EX28DRAFT_1320at 1320.958 kb on - strand, within EX28DRAFT_1320at 1320.982 kb on - strand, within EX28DRAFT_1320at 1321.074 kb on - strand, within EX28DRAFT_1320at 1321.188 kb on + strandat 1321.242 kb on + strandat 1321.243 kb on - strandat 1321.275 kb on - strand, within EX28DRAFT_1321at 1321.444 kb on + strand, within EX28DRAFT_1321at 1321.445 kb on - strand, within EX28DRAFT_1321at 1321.448 kb on + strand, within EX28DRAFT_1321at 1321.448 kb on + strand, within EX28DRAFT_1321at 1321.449 kb on - strand, within EX28DRAFT_1321at 1321.449 kb on - strand, within EX28DRAFT_1321at 1321.449 kb on - strand, within EX28DRAFT_1321at 1321.449 kb on - strand, within EX28DRAFT_1321at 1321.512 kb on + strand, within EX28DRAFT_1321at 1321.555 kb on + strand, within EX28DRAFT_1321at 1321.556 kb on - strand, within EX28DRAFT_1321at 1321.556 kb on - strand, within EX28DRAFT_1321at 1321.574 kb on - strand, within EX28DRAFT_1321at 1321.574 kb on - strand, within EX28DRAFT_1321at 1321.574 kb on - strand, within EX28DRAFT_1321at 1321.594 kb on - strand, within EX28DRAFT_1321at 1321.857 kb on + strandat 1321.857 kb on + strandat 1321.858 kb on - strandat 1321.892 kb on - strandat 1321.965 kb on - strand, within EX28DRAFT_1322at 1321.965 kb on - strand, within EX28DRAFT_1322at 1321.991 kb on + strand, within EX28DRAFT_1322at 1321.991 kb on + strand, within EX28DRAFT_1322at 1321.992 kb on - strand, within EX28DRAFT_1322at 1322.222 kb on - strand, within EX28DRAFT_1322at 1322.282 kb on + strand, within EX28DRAFT_1322at 1322.282 kb on + strand, within EX28DRAFT_1322at 1322.330 kb on + strand, within EX28DRAFT_1322at 1322.331 kb on - strand, within EX28DRAFT_1322at 1322.332 kb on + strand, within EX28DRAFT_1322at 1322.474 kb on - strand, within EX28DRAFT_1322at 1322.569 kb on + strandat 1322.592 kb on + strandat 1322.593 kb on - strandat 1322.649 kb on + strand, within EX28DRAFT_1323at 1322.875 kb on + strand, within EX28DRAFT_1324at 1322.888 kb on + strand, within EX28DRAFT_1324at 1322.889 kb on - strand, within EX28DRAFT_1324at 1322.890 kb on + strand, within EX28DRAFT_1324at 1323.125 kb on + strand, within EX28DRAFT_1324at 1323.158 kb on - strand, within EX28DRAFT_1324at 1323.241 kb on + strandat 1323.241 kb on + strandat 1323.245 kb on + strandat 1323.246 kb on - strandat 1323.267 kb on - strandat 1323.386 kb on + strand, within EX28DRAFT_1325

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,320,882 + EX28DRAFT_1320 0.53 -0.2
1,320,958 - EX28DRAFT_1320 0.65 -0.3
1,320,982 - EX28DRAFT_1320 0.68 -0.6
1,321,074 - EX28DRAFT_1320 0.82 -1.1
1,321,188 + -0.2
1,321,242 + +1.2
1,321,243 - +1.1
1,321,275 - EX28DRAFT_1321 0.12 +0.3
1,321,444 + EX28DRAFT_1321 0.38 -0.1
1,321,445 - EX28DRAFT_1321 0.38 -0.2
1,321,448 + EX28DRAFT_1321 0.38 +1.5
1,321,448 + EX28DRAFT_1321 0.38 +0.5
1,321,449 - EX28DRAFT_1321 0.38 -0.3
1,321,449 - EX28DRAFT_1321 0.38 +1.0
1,321,449 - EX28DRAFT_1321 0.38 -0.4
1,321,449 - EX28DRAFT_1321 0.38 -1.2
1,321,512 + EX28DRAFT_1321 0.48 -0.1
1,321,555 + EX28DRAFT_1321 0.54 -0.2
1,321,556 - EX28DRAFT_1321 0.54 +0.4
1,321,556 - EX28DRAFT_1321 0.54 -0.0
1,321,574 - EX28DRAFT_1321 0.57 +0.1
1,321,574 - EX28DRAFT_1321 0.57 -0.3
1,321,574 - EX28DRAFT_1321 0.57 +1.3
1,321,594 - EX28DRAFT_1321 0.60 -0.2
1,321,857 + -0.0
1,321,857 + -0.4
1,321,858 - -0.8
1,321,892 - -0.8
1,321,965 - EX28DRAFT_1322 0.13 +0.7
1,321,965 - EX28DRAFT_1322 0.13 +0.4
1,321,991 + EX28DRAFT_1322 0.17 +0.5
1,321,991 + EX28DRAFT_1322 0.17 -0.0
1,321,992 - EX28DRAFT_1322 0.17 +0.4
1,322,222 - EX28DRAFT_1322 0.49 +0.1
1,322,282 + EX28DRAFT_1322 0.58 -0.4
1,322,282 + EX28DRAFT_1322 0.58 +0.2
1,322,330 + EX28DRAFT_1322 0.65 +0.3
1,322,331 - EX28DRAFT_1322 0.65 +0.5
1,322,332 + EX28DRAFT_1322 0.65 +0.3
1,322,474 - EX28DRAFT_1322 0.85 +1.3
1,322,569 + -0.1
1,322,592 + +1.8
1,322,593 - -0.9
1,322,649 + EX28DRAFT_1323 0.37 +2.1
1,322,875 + EX28DRAFT_1324 0.28 +0.4
1,322,888 + EX28DRAFT_1324 0.30 -0.2
1,322,889 - EX28DRAFT_1324 0.30 +1.0
1,322,890 + EX28DRAFT_1324 0.31 +0.5
1,323,125 + EX28DRAFT_1324 0.79 -0.6
1,323,158 - EX28DRAFT_1324 0.86 -0.2
1,323,241 + -0.1
1,323,241 + -0.0
1,323,245 + +0.4
1,323,246 - +0.1
1,323,267 - +0.4
1,323,386 + EX28DRAFT_1325 0.25 -0.4

Or see this region's nucleotide sequence