Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1166

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1164 and EX28DRAFT_1165 overlap by 11 nucleotidesEX28DRAFT_1165 and EX28DRAFT_1166 are separated by 162 nucleotidesEX28DRAFT_1166 and EX28DRAFT_1167 are separated by 28 nucleotidesEX28DRAFT_1167 and EX28DRAFT_1168 are separated by 11 nucleotides EX28DRAFT_1164: EX28DRAFT_1164 - heavy metal sensor kinase, at 1,185,070 to 1,186,524 _1164 EX28DRAFT_1165: EX28DRAFT_1165 - heavy metal response regulator, at 1,186,514 to 1,187,197 _1165 EX28DRAFT_1166: EX28DRAFT_1166 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 1,187,360 to 1,188,745 _1166 EX28DRAFT_1167: EX28DRAFT_1167 - Uncharacterized conserved protein, at 1,188,774 to 1,189,115 _1167 EX28DRAFT_1168: EX28DRAFT_1168 - RND family efflux transporter, MFP subunit, at 1,189,127 to 1,190,377 _1168 Position (kb) 1187 1188 1189Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1186.465 kb on + strandat 1186.466 kb on - strandat 1186.530 kb on - strandat 1186.542 kb on + strandat 1186.614 kb on - strand, within EX28DRAFT_1165at 1186.772 kb on + strand, within EX28DRAFT_1165at 1186.772 kb on + strand, within EX28DRAFT_1165at 1186.838 kb on - strand, within EX28DRAFT_1165at 1186.898 kb on - strand, within EX28DRAFT_1165at 1186.933 kb on + strand, within EX28DRAFT_1165at 1186.967 kb on + strand, within EX28DRAFT_1165at 1187.155 kb on - strandat 1187.230 kb on + strandat 1187.231 kb on - strandat 1187.347 kb on + strandat 1187.359 kb on + strandat 1187.359 kb on + strandat 1187.360 kb on - strandat 1187.380 kb on + strandat 1187.381 kb on - strandat 1187.398 kb on + strandat 1187.398 kb on + strandat 1187.592 kb on + strand, within EX28DRAFT_1166at 1187.592 kb on + strand, within EX28DRAFT_1166at 1187.592 kb on + strand, within EX28DRAFT_1166at 1187.690 kb on + strand, within EX28DRAFT_1166at 1187.732 kb on + strand, within EX28DRAFT_1166at 1187.849 kb on - strand, within EX28DRAFT_1166at 1187.863 kb on + strand, within EX28DRAFT_1166at 1187.879 kb on + strand, within EX28DRAFT_1166at 1187.900 kb on + strand, within EX28DRAFT_1166at 1187.903 kb on - strand, within EX28DRAFT_1166at 1187.952 kb on - strand, within EX28DRAFT_1166at 1187.952 kb on - strand, within EX28DRAFT_1166at 1187.952 kb on - strand, within EX28DRAFT_1166at 1187.952 kb on - strand, within EX28DRAFT_1166at 1188.044 kb on - strand, within EX28DRAFT_1166at 1188.045 kb on + strand, within EX28DRAFT_1166at 1188.045 kb on + strand, within EX28DRAFT_1166at 1188.046 kb on - strand, within EX28DRAFT_1166at 1188.209 kb on - strand, within EX28DRAFT_1166at 1188.211 kb on + strand, within EX28DRAFT_1166at 1188.391 kb on + strand, within EX28DRAFT_1166at 1188.406 kb on + strand, within EX28DRAFT_1166at 1188.419 kb on - strand, within EX28DRAFT_1166at 1188.458 kb on + strand, within EX28DRAFT_1166at 1188.459 kb on - strand, within EX28DRAFT_1166at 1188.523 kb on + strand, within EX28DRAFT_1166at 1188.595 kb on - strand, within EX28DRAFT_1166at 1188.595 kb on - strand, within EX28DRAFT_1166at 1188.597 kb on - strand, within EX28DRAFT_1166at 1188.617 kb on + strandat 1188.749 kb on + strandat 1188.788 kb on + strandat 1188.941 kb on + strand, within EX28DRAFT_1167at 1189.110 kb on - strandat 1189.149 kb on - strandat 1189.161 kb on + strandat 1189.272 kb on - strand, within EX28DRAFT_1168at 1189.422 kb on + strand, within EX28DRAFT_1168at 1189.457 kb on + strand, within EX28DRAFT_1168at 1189.457 kb on + strand, within EX28DRAFT_1168at 1189.458 kb on - strand, within EX28DRAFT_1168at 1189.487 kb on + strand, within EX28DRAFT_1168at 1189.490 kb on - strand, within EX28DRAFT_1168at 1189.598 kb on - strand, within EX28DRAFT_1168at 1189.598 kb on - strand, within EX28DRAFT_1168at 1189.598 kb on - strand, within EX28DRAFT_1168at 1189.600 kb on + strand, within EX28DRAFT_1168at 1189.676 kb on - strand, within EX28DRAFT_1168at 1189.676 kb on - strand, within EX28DRAFT_1168at 1189.676 kb on - strand, within EX28DRAFT_1168

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,186,465 + +0.8
1,186,466 - +0.0
1,186,530 - +0.2
1,186,542 + -0.1
1,186,614 - EX28DRAFT_1165 0.15 -0.5
1,186,772 + EX28DRAFT_1165 0.38 -1.8
1,186,772 + EX28DRAFT_1165 0.38 -4.2
1,186,838 - EX28DRAFT_1165 0.47 -0.0
1,186,898 - EX28DRAFT_1165 0.56 +0.2
1,186,933 + EX28DRAFT_1165 0.61 -0.1
1,186,967 + EX28DRAFT_1165 0.66 -0.9
1,187,155 - +0.4
1,187,230 + -1.0
1,187,231 - +0.4
1,187,347 + -0.1
1,187,359 + -0.2
1,187,359 + -0.3
1,187,360 - -0.2
1,187,380 + -2.7
1,187,381 - +0.5
1,187,398 + +0.2
1,187,398 + -0.1
1,187,592 + EX28DRAFT_1166 0.17 -0.3
1,187,592 + EX28DRAFT_1166 0.17 +0.0
1,187,592 + EX28DRAFT_1166 0.17 +0.1
1,187,690 + EX28DRAFT_1166 0.24 -0.0
1,187,732 + EX28DRAFT_1166 0.27 -0.2
1,187,849 - EX28DRAFT_1166 0.35 -1.0
1,187,863 + EX28DRAFT_1166 0.36 +0.5
1,187,879 + EX28DRAFT_1166 0.37 +0.1
1,187,900 + EX28DRAFT_1166 0.39 -0.0
1,187,903 - EX28DRAFT_1166 0.39 +0.1
1,187,952 - EX28DRAFT_1166 0.43 +1.7
1,187,952 - EX28DRAFT_1166 0.43 -0.0
1,187,952 - EX28DRAFT_1166 0.43 +1.4
1,187,952 - EX28DRAFT_1166 0.43 +0.1
1,188,044 - EX28DRAFT_1166 0.49 +0.3
1,188,045 + EX28DRAFT_1166 0.49 +0.2
1,188,045 + EX28DRAFT_1166 0.49 +1.6
1,188,046 - EX28DRAFT_1166 0.49 +0.0
1,188,209 - EX28DRAFT_1166 0.61 -0.4
1,188,211 + EX28DRAFT_1166 0.61 +0.4
1,188,391 + EX28DRAFT_1166 0.74 -0.1
1,188,406 + EX28DRAFT_1166 0.75 +0.7
1,188,419 - EX28DRAFT_1166 0.76 -0.2
1,188,458 + EX28DRAFT_1166 0.79 +0.4
1,188,459 - EX28DRAFT_1166 0.79 -0.2
1,188,523 + EX28DRAFT_1166 0.84 -0.1
1,188,595 - EX28DRAFT_1166 0.89 -0.7
1,188,595 - EX28DRAFT_1166 0.89 -1.4
1,188,597 - EX28DRAFT_1166 0.89 +0.4
1,188,617 + +0.7
1,188,749 + -0.2
1,188,788 + -0.2
1,188,941 + EX28DRAFT_1167 0.49 +0.1
1,189,110 - -0.8
1,189,149 - +1.2
1,189,161 + -0.0
1,189,272 - EX28DRAFT_1168 0.12 +0.2
1,189,422 + EX28DRAFT_1168 0.24 -0.3
1,189,457 + EX28DRAFT_1168 0.26 -1.0
1,189,457 + EX28DRAFT_1168 0.26 +0.7
1,189,458 - EX28DRAFT_1168 0.26 -0.3
1,189,487 + EX28DRAFT_1168 0.29 -0.4
1,189,490 - EX28DRAFT_1168 0.29 -0.3
1,189,598 - EX28DRAFT_1168 0.38 -1.1
1,189,598 - EX28DRAFT_1168 0.38 -0.9
1,189,598 - EX28DRAFT_1168 0.38 +0.7
1,189,600 + EX28DRAFT_1168 0.38 +0.3
1,189,676 - EX28DRAFT_1168 0.44 -0.0
1,189,676 - EX28DRAFT_1168 0.44 -0.5
1,189,676 - EX28DRAFT_1168 0.44 +0.7

Or see this region's nucleotide sequence