Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1045 and EX28DRAFT_1046 are separated by 322 nucleotides EX28DRAFT_1046 and EX28DRAFT_1047 are separated by 112 nucleotides EX28DRAFT_1047 and EX28DRAFT_1048 overlap by 4 nucleotides
EX28DRAFT_1045: EX28DRAFT_1045 - Gamma-aminobutyrate permease and related permeases, at 1,055,911 to 1,057,407
_1045
EX28DRAFT_1046: EX28DRAFT_1046 - Transcriptional regulator, at 1,057,730 to 1,058,626
_1046
EX28DRAFT_1047: EX28DRAFT_1047 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 1,058,739 to 1,059,137
_1047
EX28DRAFT_1048: EX28DRAFT_1048 - PAS domain S-box, at 1,059,134 to 1,060,669
_1048
Position (kb)
1057
1058
1059 Strain fitness (log2 ratio)
-2
-1
0
1 at 1057.012 kb on - strand, within EX28DRAFT_1045 at 1057.012 kb on - strand, within EX28DRAFT_1045 at 1057.012 kb on - strand, within EX28DRAFT_1045 at 1057.014 kb on - strand, within EX28DRAFT_1045 at 1057.014 kb on - strand, within EX28DRAFT_1045 at 1057.067 kb on + strand, within EX28DRAFT_1045 at 1057.068 kb on - strand, within EX28DRAFT_1045 at 1057.085 kb on + strand, within EX28DRAFT_1045 at 1057.119 kb on - strand, within EX28DRAFT_1045 at 1057.209 kb on - strand, within EX28DRAFT_1045 at 1057.445 kb on + strand at 1057.804 kb on - strand at 1057.900 kb on - strand, within EX28DRAFT_1046 at 1058.017 kb on - strand, within EX28DRAFT_1046 at 1058.106 kb on + strand, within EX28DRAFT_1046 at 1058.113 kb on + strand, within EX28DRAFT_1046 at 1058.164 kb on + strand, within EX28DRAFT_1046 at 1058.165 kb on - strand, within EX28DRAFT_1046 at 1058.193 kb on - strand, within EX28DRAFT_1046 at 1058.240 kb on + strand, within EX28DRAFT_1046 at 1058.241 kb on - strand, within EX28DRAFT_1046 at 1058.585 kb on + strand at 1058.590 kb on + strand at 1058.591 kb on - strand at 1058.591 kb on - strand at 1058.621 kb on + strand at 1058.665 kb on + strand at 1058.735 kb on + strand at 1058.736 kb on - strand at 1058.736 kb on - strand at 1058.764 kb on + strand at 1058.765 kb on - strand at 1058.897 kb on + strand, within EX28DRAFT_1047 at 1058.947 kb on + strand, within EX28DRAFT_1047 at 1058.948 kb on - strand, within EX28DRAFT_1047 at 1058.975 kb on - strand, within EX28DRAFT_1047 at 1059.355 kb on + strand, within EX28DRAFT_1048 at 1059.558 kb on - strand, within EX28DRAFT_1048 at 1059.558 kb on - strand, within EX28DRAFT_1048 at 1059.558 kb on - strand, within EX28DRAFT_1048
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,057,012 - EX28DRAFT_1045 0.74 -0.3 1,057,012 - EX28DRAFT_1045 0.74 -0.3 1,057,012 - EX28DRAFT_1045 0.74 -0.2 1,057,014 - EX28DRAFT_1045 0.74 -0.3 1,057,014 - EX28DRAFT_1045 0.74 +0.6 1,057,067 + EX28DRAFT_1045 0.77 +0.8 1,057,068 - EX28DRAFT_1045 0.77 +0.3 1,057,085 + EX28DRAFT_1045 0.78 +0.5 1,057,119 - EX28DRAFT_1045 0.81 -0.4 1,057,209 - EX28DRAFT_1045 0.87 -0.3 1,057,445 + -0.4 1,057,804 - -1.2 1,057,900 - EX28DRAFT_1046 0.19 -0.1 1,058,017 - EX28DRAFT_1046 0.32 -0.6 1,058,106 + EX28DRAFT_1046 0.42 -0.2 1,058,113 + EX28DRAFT_1046 0.43 -2.0 1,058,164 + EX28DRAFT_1046 0.48 -0.9 1,058,165 - EX28DRAFT_1046 0.48 -0.7 1,058,193 - EX28DRAFT_1046 0.52 -0.1 1,058,240 + EX28DRAFT_1046 0.57 -0.4 1,058,241 - EX28DRAFT_1046 0.57 -0.1 1,058,585 + +0.3 1,058,590 + +0.1 1,058,591 - -0.7 1,058,591 - +0.0 1,058,621 + -0.5 1,058,665 + +0.3 1,058,735 + +0.0 1,058,736 - -0.2 1,058,736 - +0.8 1,058,764 + +0.3 1,058,765 - +0.8 1,058,897 + EX28DRAFT_1047 0.40 -0.1 1,058,947 + EX28DRAFT_1047 0.52 -0.5 1,058,948 - EX28DRAFT_1047 0.52 -0.8 1,058,975 - EX28DRAFT_1047 0.59 -0.4 1,059,355 + EX28DRAFT_1048 0.14 +0.3 1,059,558 - EX28DRAFT_1048 0.28 +0.2 1,059,558 - EX28DRAFT_1048 0.28 +0.1 1,059,558 - EX28DRAFT_1048 0.28 +0.7
Or see this region's nucleotide sequence