Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1043 and EX28DRAFT_1044 are separated by 242 nucleotides EX28DRAFT_1044 and EX28DRAFT_1045 are separated by 51 nucleotides
EX28DRAFT_1043: EX28DRAFT_1043 - TonB-dependent siderophore receptor, at 1,052,441 to 1,054,555
_1043
EX28DRAFT_1044: EX28DRAFT_1044 - 40-residue YVTN family beta-propeller repeat, at 1,054,798 to 1,055,859
_1044
EX28DRAFT_1045: EX28DRAFT_1045 - Gamma-aminobutyrate permease and related permeases, at 1,055,911 to 1,057,407
_1045
Position (kb)
1054
1055
1056 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1054.035 kb on + strand, within EX28DRAFT_1043 at 1054.087 kb on + strand, within EX28DRAFT_1043 at 1054.224 kb on + strand, within EX28DRAFT_1043 at 1054.224 kb on + strand, within EX28DRAFT_1043 at 1054.224 kb on + strand, within EX28DRAFT_1043 at 1054.224 kb on + strand, within EX28DRAFT_1043 at 1054.224 kb on + strand, within EX28DRAFT_1043 at 1054.225 kb on - strand, within EX28DRAFT_1043 at 1054.225 kb on - strand, within EX28DRAFT_1043 at 1054.225 kb on - strand, within EX28DRAFT_1043 at 1054.228 kb on + strand, within EX28DRAFT_1043 at 1054.228 kb on + strand, within EX28DRAFT_1043 at 1054.299 kb on + strand, within EX28DRAFT_1043 at 1054.299 kb on + strand, within EX28DRAFT_1043 at 1054.299 kb on + strand, within EX28DRAFT_1043 at 1054.299 kb on + strand, within EX28DRAFT_1043 at 1054.300 kb on - strand, within EX28DRAFT_1043 at 1054.300 kb on - strand, within EX28DRAFT_1043 at 1054.559 kb on + strand at 1054.559 kb on + strand at 1054.576 kb on + strand at 1054.612 kb on - strand at 1054.639 kb on - strand at 1055.263 kb on + strand, within EX28DRAFT_1044 at 1055.263 kb on + strand, within EX28DRAFT_1044 at 1055.263 kb on + strand, within EX28DRAFT_1044 at 1055.353 kb on + strand, within EX28DRAFT_1044 at 1055.353 kb on + strand, within EX28DRAFT_1044 at 1055.353 kb on + strand, within EX28DRAFT_1044 at 1055.353 kb on + strand, within EX28DRAFT_1044 at 1055.495 kb on - strand, within EX28DRAFT_1044 at 1055.656 kb on + strand, within EX28DRAFT_1044 at 1055.657 kb on - strand, within EX28DRAFT_1044 at 1055.657 kb on - strand, within EX28DRAFT_1044 at 1055.707 kb on + strand, within EX28DRAFT_1044 at 1055.783 kb on - strand at 1055.805 kb on + strand at 1055.857 kb on + strand at 1056.062 kb on + strand, within EX28DRAFT_1045 at 1056.062 kb on + strand, within EX28DRAFT_1045 at 1056.062 kb on + strand, within EX28DRAFT_1045 at 1056.062 kb on + strand, within EX28DRAFT_1045 at 1056.063 kb on - strand, within EX28DRAFT_1045 at 1056.063 kb on - strand, within EX28DRAFT_1045 at 1056.066 kb on + strand, within EX28DRAFT_1045 at 1056.067 kb on - strand, within EX28DRAFT_1045 at 1056.296 kb on + strand, within EX28DRAFT_1045 at 1056.296 kb on + strand, within EX28DRAFT_1045 at 1056.296 kb on + strand, within EX28DRAFT_1045 at 1056.297 kb on - strand, within EX28DRAFT_1045 at 1056.307 kb on + strand, within EX28DRAFT_1045 at 1056.316 kb on + strand, within EX28DRAFT_1045 at 1056.316 kb on + strand, within EX28DRAFT_1045 at 1056.320 kb on + strand, within EX28DRAFT_1045 at 1056.321 kb on - strand, within EX28DRAFT_1045 at 1056.437 kb on + strand, within EX28DRAFT_1045 at 1056.438 kb on - strand, within EX28DRAFT_1045 at 1056.503 kb on + strand, within EX28DRAFT_1045 at 1056.504 kb on - strand, within EX28DRAFT_1045 at 1056.504 kb on - strand, within EX28DRAFT_1045 at 1056.508 kb on + strand, within EX28DRAFT_1045 at 1056.558 kb on - strand, within EX28DRAFT_1045 at 1056.670 kb on - strand, within EX28DRAFT_1045 at 1056.670 kb on - strand, within EX28DRAFT_1045 at 1056.670 kb on - strand, within EX28DRAFT_1045 at 1056.670 kb on - strand, within EX28DRAFT_1045 at 1056.670 kb on - strand, within EX28DRAFT_1045 at 1056.670 kb on - strand, within EX28DRAFT_1045
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,054,035 + EX28DRAFT_1043 0.75 +0.0 1,054,087 + EX28DRAFT_1043 0.78 -0.6 1,054,224 + EX28DRAFT_1043 0.84 -0.3 1,054,224 + EX28DRAFT_1043 0.84 -0.5 1,054,224 + EX28DRAFT_1043 0.84 +0.3 1,054,224 + EX28DRAFT_1043 0.84 -0.5 1,054,224 + EX28DRAFT_1043 0.84 +1.8 1,054,225 - EX28DRAFT_1043 0.84 +0.7 1,054,225 - EX28DRAFT_1043 0.84 +0.1 1,054,225 - EX28DRAFT_1043 0.84 +1.4 1,054,228 + EX28DRAFT_1043 0.84 +0.7 1,054,228 + EX28DRAFT_1043 0.84 -0.0 1,054,299 + EX28DRAFT_1043 0.88 +0.6 1,054,299 + EX28DRAFT_1043 0.88 -1.5 1,054,299 + EX28DRAFT_1043 0.88 +0.5 1,054,299 + EX28DRAFT_1043 0.88 +1.3 1,054,300 - EX28DRAFT_1043 0.88 -0.1 1,054,300 - EX28DRAFT_1043 0.88 +1.1 1,054,559 + -0.0 1,054,559 + -0.6 1,054,576 + -0.2 1,054,612 - -0.8 1,054,639 - -0.9 1,055,263 + EX28DRAFT_1044 0.44 +1.0 1,055,263 + EX28DRAFT_1044 0.44 -0.4 1,055,263 + EX28DRAFT_1044 0.44 +0.3 1,055,353 + EX28DRAFT_1044 0.52 +0.2 1,055,353 + EX28DRAFT_1044 0.52 -0.7 1,055,353 + EX28DRAFT_1044 0.52 +2.3 1,055,353 + EX28DRAFT_1044 0.52 -0.2 1,055,495 - EX28DRAFT_1044 0.66 -0.2 1,055,656 + EX28DRAFT_1044 0.81 -1.0 1,055,657 - EX28DRAFT_1044 0.81 -0.5 1,055,657 - EX28DRAFT_1044 0.81 +0.6 1,055,707 + EX28DRAFT_1044 0.86 +0.9 1,055,783 - -0.4 1,055,805 + +0.5 1,055,857 + +0.6 1,056,062 + EX28DRAFT_1045 0.10 +0.3 1,056,062 + EX28DRAFT_1045 0.10 -2.3 1,056,062 + EX28DRAFT_1045 0.10 -1.2 1,056,062 + EX28DRAFT_1045 0.10 +0.5 1,056,063 - EX28DRAFT_1045 0.10 -0.1 1,056,063 - EX28DRAFT_1045 0.10 +0.4 1,056,066 + EX28DRAFT_1045 0.10 +1.2 1,056,067 - EX28DRAFT_1045 0.10 -0.1 1,056,296 + EX28DRAFT_1045 0.26 -0.1 1,056,296 + EX28DRAFT_1045 0.26 -0.1 1,056,296 + EX28DRAFT_1045 0.26 -0.5 1,056,297 - EX28DRAFT_1045 0.26 -0.0 1,056,307 + EX28DRAFT_1045 0.26 -0.5 1,056,316 + EX28DRAFT_1045 0.27 +0.0 1,056,316 + EX28DRAFT_1045 0.27 +0.3 1,056,320 + EX28DRAFT_1045 0.27 -0.8 1,056,321 - EX28DRAFT_1045 0.27 +0.2 1,056,437 + EX28DRAFT_1045 0.35 +0.1 1,056,438 - EX28DRAFT_1045 0.35 -1.5 1,056,503 + EX28DRAFT_1045 0.40 +0.6 1,056,504 - EX28DRAFT_1045 0.40 -0.1 1,056,504 - EX28DRAFT_1045 0.40 +0.5 1,056,508 + EX28DRAFT_1045 0.40 -0.8 1,056,558 - EX28DRAFT_1045 0.43 -0.4 1,056,670 - EX28DRAFT_1045 0.51 +0.3 1,056,670 - EX28DRAFT_1045 0.51 -0.4 1,056,670 - EX28DRAFT_1045 0.51 +1.5 1,056,670 - EX28DRAFT_1045 0.51 +0.1 1,056,670 - EX28DRAFT_1045 0.51 +0.4 1,056,670 - EX28DRAFT_1045 0.51 +0.2
Or see this region's nucleotide sequence