Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1015 and EX28DRAFT_1016 are separated by 3 nucleotides EX28DRAFT_1016 and EX28DRAFT_1017 are separated by 482 nucleotides EX28DRAFT_1017 and EX28DRAFT_1018 are separated by 389 nucleotides
EX28DRAFT_1015: EX28DRAFT_1015 - hypothetical protein, at 1,021,087 to 1,021,284
_1015
EX28DRAFT_1016: EX28DRAFT_1016 - Uncharacterized conserved protein, at 1,021,288 to 1,021,710
_1016
EX28DRAFT_1017: EX28DRAFT_1017 - Outer membrane protein (porin), at 1,022,193 to 1,023,302
_1017
EX28DRAFT_1018: EX28DRAFT_1018 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric, at 1,023,692 to 1,027,216
_1018
Position (kb)
1022
1023
1024 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1021.232 kb on + strand, within EX28DRAFT_1015 at 1021.282 kb on + strand at 1021.458 kb on + strand, within EX28DRAFT_1016 at 1021.458 kb on + strand, within EX28DRAFT_1016 at 1021.459 kb on - strand, within EX28DRAFT_1016 at 1021.731 kb on + strand at 1021.731 kb on + strand at 1021.745 kb on + strand at 1021.745 kb on + strand at 1021.746 kb on - strand at 1021.746 kb on - strand at 1021.778 kb on + strand at 1021.865 kb on - strand at 1021.941 kb on - strand at 1022.006 kb on + strand at 1022.006 kb on + strand at 1022.007 kb on - strand at 1022.019 kb on - strand at 1022.030 kb on + strand at 1022.031 kb on - strand at 1022.105 kb on + strand at 1022.106 kb on - strand at 1022.106 kb on - strand at 1022.127 kb on + strand at 1022.177 kb on - strand at 1022.220 kb on + strand at 1022.254 kb on + strand at 1022.299 kb on + strand at 1022.323 kb on + strand, within EX28DRAFT_1017 at 1022.326 kb on + strand, within EX28DRAFT_1017 at 1022.326 kb on + strand, within EX28DRAFT_1017 at 1022.327 kb on - strand, within EX28DRAFT_1017 at 1022.347 kb on + strand, within EX28DRAFT_1017 at 1022.347 kb on + strand, within EX28DRAFT_1017 at 1022.348 kb on - strand, within EX28DRAFT_1017 at 1022.351 kb on + strand, within EX28DRAFT_1017 at 1022.390 kb on + strand, within EX28DRAFT_1017 at 1022.492 kb on + strand, within EX28DRAFT_1017 at 1022.495 kb on + strand, within EX28DRAFT_1017 at 1022.495 kb on + strand, within EX28DRAFT_1017 at 1022.495 kb on + strand, within EX28DRAFT_1017 at 1022.496 kb on - strand, within EX28DRAFT_1017 at 1022.513 kb on + strand, within EX28DRAFT_1017 at 1022.530 kb on + strand, within EX28DRAFT_1017 at 1022.530 kb on + strand, within EX28DRAFT_1017 at 1022.545 kb on + strand, within EX28DRAFT_1017 at 1022.546 kb on - strand, within EX28DRAFT_1017 at 1022.552 kb on + strand, within EX28DRAFT_1017 at 1022.563 kb on + strand, within EX28DRAFT_1017 at 1022.564 kb on - strand, within EX28DRAFT_1017 at 1022.648 kb on + strand, within EX28DRAFT_1017 at 1022.648 kb on + strand, within EX28DRAFT_1017 at 1022.648 kb on + strand, within EX28DRAFT_1017 at 1022.649 kb on - strand, within EX28DRAFT_1017 at 1022.649 kb on - strand, within EX28DRAFT_1017 at 1022.650 kb on + strand, within EX28DRAFT_1017 at 1022.650 kb on + strand, within EX28DRAFT_1017 at 1022.651 kb on - strand, within EX28DRAFT_1017 at 1022.651 kb on - strand, within EX28DRAFT_1017 at 1022.666 kb on + strand, within EX28DRAFT_1017 at 1022.666 kb on + strand, within EX28DRAFT_1017 at 1022.686 kb on + strand, within EX28DRAFT_1017 at 1022.686 kb on + strand, within EX28DRAFT_1017 at 1022.687 kb on - strand, within EX28DRAFT_1017 at 1022.687 kb on - strand, within EX28DRAFT_1017 at 1022.687 kb on - strand, within EX28DRAFT_1017 at 1022.700 kb on - strand, within EX28DRAFT_1017 at 1022.824 kb on + strand, within EX28DRAFT_1017 at 1022.893 kb on + strand, within EX28DRAFT_1017 at 1022.957 kb on - strand, within EX28DRAFT_1017 at 1022.957 kb on - strand, within EX28DRAFT_1017 at 1022.960 kb on + strand, within EX28DRAFT_1017 at 1022.961 kb on - strand, within EX28DRAFT_1017 at 1022.961 kb on - strand, within EX28DRAFT_1017 at 1022.984 kb on - strand, within EX28DRAFT_1017 at 1023.067 kb on + strand, within EX28DRAFT_1017 at 1023.068 kb on - strand, within EX28DRAFT_1017 at 1023.134 kb on + strand, within EX28DRAFT_1017 at 1023.136 kb on + strand, within EX28DRAFT_1017 at 1023.137 kb on - strand, within EX28DRAFT_1017 at 1023.137 kb on - strand, within EX28DRAFT_1017 at 1023.190 kb on - strand, within EX28DRAFT_1017 at 1023.228 kb on - strand at 1023.478 kb on + strand at 1023.504 kb on + strand at 1023.528 kb on - strand at 1023.552 kb on + strand at 1023.568 kb on + strand at 1023.572 kb on + strand at 1023.895 kb on + strand at 1023.990 kb on + strand at 1024.015 kb on - strand at 1024.015 kb on - strand at 1024.042 kb on - strand at 1024.123 kb on - strand, within EX28DRAFT_1018 at 1024.165 kb on + strand, within EX28DRAFT_1018
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,021,232 + EX28DRAFT_1015 0.73 +0.6 1,021,282 + -0.0 1,021,458 + EX28DRAFT_1016 0.40 +0.1 1,021,458 + EX28DRAFT_1016 0.40 +0.5 1,021,459 - EX28DRAFT_1016 0.40 -0.5 1,021,731 + -0.2 1,021,731 + -0.1 1,021,745 + +0.8 1,021,745 + -0.3 1,021,746 - -0.4 1,021,746 - +1.2 1,021,778 + +0.4 1,021,865 - +1.0 1,021,941 - +0.1 1,022,006 + +0.1 1,022,006 + +0.2 1,022,007 - -0.1 1,022,019 - -0.2 1,022,030 + -0.1 1,022,031 - +0.6 1,022,105 + -1.8 1,022,106 - +0.5 1,022,106 - +0.2 1,022,127 + -0.4 1,022,177 - +0.1 1,022,220 + -0.2 1,022,254 + -0.6 1,022,299 + +1.4 1,022,323 + EX28DRAFT_1017 0.12 +1.3 1,022,326 + EX28DRAFT_1017 0.12 -0.1 1,022,326 + EX28DRAFT_1017 0.12 -0.1 1,022,327 - EX28DRAFT_1017 0.12 -0.7 1,022,347 + EX28DRAFT_1017 0.14 -0.8 1,022,347 + EX28DRAFT_1017 0.14 +0.2 1,022,348 - EX28DRAFT_1017 0.14 -0.6 1,022,351 + EX28DRAFT_1017 0.14 -0.4 1,022,390 + EX28DRAFT_1017 0.18 +0.5 1,022,492 + EX28DRAFT_1017 0.27 +2.3 1,022,495 + EX28DRAFT_1017 0.27 -0.8 1,022,495 + EX28DRAFT_1017 0.27 -0.4 1,022,495 + EX28DRAFT_1017 0.27 +0.4 1,022,496 - EX28DRAFT_1017 0.27 -0.4 1,022,513 + EX28DRAFT_1017 0.29 +0.5 1,022,530 + EX28DRAFT_1017 0.30 +0.3 1,022,530 + EX28DRAFT_1017 0.30 +0.3 1,022,545 + EX28DRAFT_1017 0.32 -0.3 1,022,546 - EX28DRAFT_1017 0.32 +0.3 1,022,552 + EX28DRAFT_1017 0.32 -0.2 1,022,563 + EX28DRAFT_1017 0.33 -0.1 1,022,564 - EX28DRAFT_1017 0.33 +0.3 1,022,648 + EX28DRAFT_1017 0.41 +0.2 1,022,648 + EX28DRAFT_1017 0.41 +0.4 1,022,648 + EX28DRAFT_1017 0.41 -1.9 1,022,649 - EX28DRAFT_1017 0.41 -0.4 1,022,649 - EX28DRAFT_1017 0.41 +0.2 1,022,650 + EX28DRAFT_1017 0.41 +0.2 1,022,650 + EX28DRAFT_1017 0.41 -0.2 1,022,651 - EX28DRAFT_1017 0.41 +0.3 1,022,651 - EX28DRAFT_1017 0.41 +0.5 1,022,666 + EX28DRAFT_1017 0.43 +0.2 1,022,666 + EX28DRAFT_1017 0.43 -0.3 1,022,686 + EX28DRAFT_1017 0.44 +0.2 1,022,686 + EX28DRAFT_1017 0.44 -0.6 1,022,687 - EX28DRAFT_1017 0.45 +0.3 1,022,687 - EX28DRAFT_1017 0.45 +0.4 1,022,687 - EX28DRAFT_1017 0.45 -0.1 1,022,700 - EX28DRAFT_1017 0.46 -0.1 1,022,824 + EX28DRAFT_1017 0.57 -0.2 1,022,893 + EX28DRAFT_1017 0.63 +0.5 1,022,957 - EX28DRAFT_1017 0.69 -0.0 1,022,957 - EX28DRAFT_1017 0.69 +0.3 1,022,960 + EX28DRAFT_1017 0.69 +0.1 1,022,961 - EX28DRAFT_1017 0.69 +0.2 1,022,961 - EX28DRAFT_1017 0.69 +0.5 1,022,984 - EX28DRAFT_1017 0.71 -0.2 1,023,067 + EX28DRAFT_1017 0.79 +0.1 1,023,068 - EX28DRAFT_1017 0.79 +0.3 1,023,134 + EX28DRAFT_1017 0.85 -0.2 1,023,136 + EX28DRAFT_1017 0.85 +1.3 1,023,137 - EX28DRAFT_1017 0.85 +0.3 1,023,137 - EX28DRAFT_1017 0.85 -0.2 1,023,190 - EX28DRAFT_1017 0.90 -0.5 1,023,228 - -0.4 1,023,478 + -0.1 1,023,504 + -0.3 1,023,528 - -0.1 1,023,552 + +0.7 1,023,568 + +0.2 1,023,572 + -0.4 1,023,895 + +0.1 1,023,990 + -0.8 1,024,015 - +0.2 1,024,015 - +0.2 1,024,042 - -0.6 1,024,123 - EX28DRAFT_1018 0.12 +1.1 1,024,165 + EX28DRAFT_1018 0.13 +0.4
Or see this region's nucleotide sequence