Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1004 and EX28DRAFT_1005 are separated by 95 nucleotides EX28DRAFT_1005 and EX28DRAFT_1006 are separated by 272 nucleotides EX28DRAFT_1006 and EX28DRAFT_1007 are separated by 42 nucleotides
EX28DRAFT_1004: EX28DRAFT_1004 - Mg2+ and Co2+ transporters, at 1,010,247 to 1,011,230
_1004
EX28DRAFT_1005: EX28DRAFT_1005 - RNA, at 1,011,326 to 1,011,441
_1005
EX28DRAFT_1006: EX28DRAFT_1006 - Superfamily II DNA and RNA helicases, at 1,011,714 to 1,013,087
_1006
EX28DRAFT_1007: EX28DRAFT_1007 - Predicted ATPase of the PP-loop superfamily implicated in cell cycle control, at 1,013,130 to 1,014,065
_1007
Position (kb)
1011
1012
1013
1014 Strain fitness (log2 ratio)
-1
0
1 at 1010.846 kb on + strand, within EX28DRAFT_1004 at 1010.847 kb on - strand, within EX28DRAFT_1004 at 1011.049 kb on - strand, within EX28DRAFT_1004 at 1011.051 kb on - strand, within EX28DRAFT_1004 at 1011.175 kb on + strand at 1011.176 kb on - strand at 1011.316 kb on + strand at 1011.316 kb on + strand at 1011.317 kb on - strand at 1011.317 kb on - strand at 1011.367 kb on - strand, within EX28DRAFT_1005 at 1011.374 kb on + strand, within EX28DRAFT_1005 at 1011.375 kb on - strand, within EX28DRAFT_1005 at 1011.399 kb on - strand, within EX28DRAFT_1005 at 1011.710 kb on + strand at 1012.088 kb on + strand, within EX28DRAFT_1006 at 1012.088 kb on + strand, within EX28DRAFT_1006 at 1012.088 kb on + strand, within EX28DRAFT_1006 at 1012.089 kb on - strand, within EX28DRAFT_1006 at 1012.154 kb on - strand, within EX28DRAFT_1006 at 1012.342 kb on + strand, within EX28DRAFT_1006 at 1012.342 kb on + strand, within EX28DRAFT_1006 at 1012.342 kb on + strand, within EX28DRAFT_1006 at 1012.342 kb on + strand, within EX28DRAFT_1006 at 1012.342 kb on + strand, within EX28DRAFT_1006 at 1012.342 kb on + strand, within EX28DRAFT_1006 at 1012.343 kb on - strand, within EX28DRAFT_1006 at 1012.343 kb on - strand, within EX28DRAFT_1006 at 1012.343 kb on - strand, within EX28DRAFT_1006 at 1012.343 kb on - strand, within EX28DRAFT_1006 at 1012.634 kb on + strand, within EX28DRAFT_1006 at 1012.635 kb on - strand, within EX28DRAFT_1006 at 1012.635 kb on - strand, within EX28DRAFT_1006 at 1012.799 kb on + strand, within EX28DRAFT_1006 at 1012.800 kb on - strand, within EX28DRAFT_1006 at 1012.912 kb on + strand, within EX28DRAFT_1006 at 1012.913 kb on - strand, within EX28DRAFT_1006 at 1012.913 kb on - strand, within EX28DRAFT_1006 at 1012.913 kb on - strand, within EX28DRAFT_1006 at 1012.913 kb on - strand, within EX28DRAFT_1006 at 1012.915 kb on + strand, within EX28DRAFT_1006 at 1012.915 kb on + strand, within EX28DRAFT_1006 at 1012.990 kb on - strand at 1013.019 kb on - strand at 1013.085 kb on + strand at 1013.132 kb on - strand at 1013.217 kb on - strand at 1013.217 kb on - strand at 1013.217 kb on - strand at 1013.280 kb on - strand, within EX28DRAFT_1007 at 1013.515 kb on - strand, within EX28DRAFT_1007 at 1013.582 kb on + strand, within EX28DRAFT_1007 at 1013.765 kb on + strand, within EX28DRAFT_1007 at 1013.765 kb on + strand, within EX28DRAFT_1007 at 1013.791 kb on + strand, within EX28DRAFT_1007 at 1013.906 kb on + strand, within EX28DRAFT_1007 at 1013.908 kb on + strand, within EX28DRAFT_1007 at 1013.908 kb on + strand, within EX28DRAFT_1007 at 1013.908 kb on + strand, within EX28DRAFT_1007 at 1013.908 kb on + strand, within EX28DRAFT_1007 at 1013.908 kb on + strand, within EX28DRAFT_1007 at 1013.909 kb on - strand, within EX28DRAFT_1007 at 1013.909 kb on - strand, within EX28DRAFT_1007 at 1013.909 kb on - strand, within EX28DRAFT_1007
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,010,846 + EX28DRAFT_1004 0.61 +0.5 1,010,847 - EX28DRAFT_1004 0.61 +0.7 1,011,049 - EX28DRAFT_1004 0.82 +0.2 1,011,051 - EX28DRAFT_1004 0.82 +0.1 1,011,175 + -0.5 1,011,176 - +0.7 1,011,316 + -0.0 1,011,316 + -0.1 1,011,317 - -0.1 1,011,317 - +0.5 1,011,367 - EX28DRAFT_1005 0.35 -0.4 1,011,374 + EX28DRAFT_1005 0.41 +0.2 1,011,375 - EX28DRAFT_1005 0.42 -0.3 1,011,399 - EX28DRAFT_1005 0.63 -0.0 1,011,710 + -1.3 1,012,088 + EX28DRAFT_1006 0.27 +0.1 1,012,088 + EX28DRAFT_1006 0.27 +0.2 1,012,088 + EX28DRAFT_1006 0.27 +0.3 1,012,089 - EX28DRAFT_1006 0.27 -0.6 1,012,154 - EX28DRAFT_1006 0.32 +0.2 1,012,342 + EX28DRAFT_1006 0.46 -0.6 1,012,342 + EX28DRAFT_1006 0.46 -0.0 1,012,342 + EX28DRAFT_1006 0.46 +0.6 1,012,342 + EX28DRAFT_1006 0.46 +0.2 1,012,342 + EX28DRAFT_1006 0.46 +1.1 1,012,342 + EX28DRAFT_1006 0.46 +0.8 1,012,343 - EX28DRAFT_1006 0.46 -0.1 1,012,343 - EX28DRAFT_1006 0.46 +0.1 1,012,343 - EX28DRAFT_1006 0.46 -0.3 1,012,343 - EX28DRAFT_1006 0.46 +0.2 1,012,634 + EX28DRAFT_1006 0.67 +0.4 1,012,635 - EX28DRAFT_1006 0.67 +0.4 1,012,635 - EX28DRAFT_1006 0.67 -0.1 1,012,799 + EX28DRAFT_1006 0.79 -0.4 1,012,800 - EX28DRAFT_1006 0.79 +0.4 1,012,912 + EX28DRAFT_1006 0.87 -1.2 1,012,913 - EX28DRAFT_1006 0.87 +0.6 1,012,913 - EX28DRAFT_1006 0.87 +0.2 1,012,913 - EX28DRAFT_1006 0.87 -1.1 1,012,913 - EX28DRAFT_1006 0.87 +0.3 1,012,915 + EX28DRAFT_1006 0.87 -0.1 1,012,915 + EX28DRAFT_1006 0.87 +0.5 1,012,990 - -0.3 1,013,019 - -0.7 1,013,085 + +1.1 1,013,132 - -0.0 1,013,217 - +1.0 1,013,217 - -1.0 1,013,217 - +0.3 1,013,280 - EX28DRAFT_1007 0.16 +0.5 1,013,515 - EX28DRAFT_1007 0.41 -0.1 1,013,582 + EX28DRAFT_1007 0.48 +0.3 1,013,765 + EX28DRAFT_1007 0.68 -0.8 1,013,765 + EX28DRAFT_1007 0.68 -0.8 1,013,791 + EX28DRAFT_1007 0.71 +0.4 1,013,906 + EX28DRAFT_1007 0.83 -0.9 1,013,908 + EX28DRAFT_1007 0.83 +0.6 1,013,908 + EX28DRAFT_1007 0.83 +0.4 1,013,908 + EX28DRAFT_1007 0.83 -1.2 1,013,908 + EX28DRAFT_1007 0.83 -0.7 1,013,908 + EX28DRAFT_1007 0.83 +0.4 1,013,909 - EX28DRAFT_1007 0.83 +1.4 1,013,909 - EX28DRAFT_1007 0.83 +0.3 1,013,909 - EX28DRAFT_1007 0.83 +0.8
Or see this region's nucleotide sequence