Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1004

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1003 and EX28DRAFT_1004 are separated by 154 nucleotidesEX28DRAFT_1004 and EX28DRAFT_1005 are separated by 95 nucleotidesEX28DRAFT_1005 and EX28DRAFT_1006 are separated by 272 nucleotides EX28DRAFT_1003: EX28DRAFT_1003 - Methyl-accepting chemotaxis protein, at 1,008,950 to 1,010,092 _1003 EX28DRAFT_1004: EX28DRAFT_1004 - Mg2+ and Co2+ transporters, at 1,010,247 to 1,011,230 _1004 EX28DRAFT_1005: EX28DRAFT_1005 - RNA, at 1,011,326 to 1,011,441 _1005 EX28DRAFT_1006: EX28DRAFT_1006 - Superfamily II DNA and RNA helicases, at 1,011,714 to 1,013,087 _1006 Position (kb) 1010 1011 1012Strain fitness (log2 ratio) -1 0 1at 1009.330 kb on + strand, within EX28DRAFT_1003at 1009.520 kb on - strand, within EX28DRAFT_1003at 1009.520 kb on - strand, within EX28DRAFT_1003at 1009.562 kb on - strand, within EX28DRAFT_1003at 1009.597 kb on + strand, within EX28DRAFT_1003at 1009.678 kb on - strand, within EX28DRAFT_1003at 1009.678 kb on - strand, within EX28DRAFT_1003at 1009.748 kb on - strand, within EX28DRAFT_1003at 1009.927 kb on + strand, within EX28DRAFT_1003at 1009.968 kb on + strand, within EX28DRAFT_1003at 1009.968 kb on + strand, within EX28DRAFT_1003at 1009.969 kb on - strand, within EX28DRAFT_1003at 1009.969 kb on - strand, within EX28DRAFT_1003at 1010.182 kb on + strandat 1010.182 kb on + strandat 1010.182 kb on + strandat 1010.182 kb on + strandat 1010.182 kb on + strandat 1010.182 kb on + strandat 1010.183 kb on - strandat 1010.183 kb on - strandat 1010.183 kb on - strandat 1010.183 kb on - strandat 1010.183 kb on - strandat 1010.211 kb on - strandat 1010.230 kb on - strandat 1010.258 kb on + strandat 1010.340 kb on - strandat 1010.374 kb on + strand, within EX28DRAFT_1004at 1010.385 kb on + strand, within EX28DRAFT_1004at 1010.574 kb on + strand, within EX28DRAFT_1004at 1010.846 kb on + strand, within EX28DRAFT_1004at 1010.847 kb on - strand, within EX28DRAFT_1004at 1011.049 kb on - strand, within EX28DRAFT_1004at 1011.051 kb on - strand, within EX28DRAFT_1004at 1011.175 kb on + strandat 1011.176 kb on - strandat 1011.316 kb on + strandat 1011.316 kb on + strandat 1011.317 kb on - strandat 1011.317 kb on - strandat 1011.367 kb on - strand, within EX28DRAFT_1005at 1011.374 kb on + strand, within EX28DRAFT_1005at 1011.375 kb on - strand, within EX28DRAFT_1005at 1011.399 kb on - strand, within EX28DRAFT_1005at 1011.710 kb on + strandat 1012.088 kb on + strand, within EX28DRAFT_1006at 1012.088 kb on + strand, within EX28DRAFT_1006at 1012.088 kb on + strand, within EX28DRAFT_1006at 1012.089 kb on - strand, within EX28DRAFT_1006at 1012.154 kb on - strand, within EX28DRAFT_1006

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,009,330 + EX28DRAFT_1003 0.33 +0.2
1,009,520 - EX28DRAFT_1003 0.50 +0.6
1,009,520 - EX28DRAFT_1003 0.50 +1.0
1,009,562 - EX28DRAFT_1003 0.54 +0.2
1,009,597 + EX28DRAFT_1003 0.57 +0.7
1,009,678 - EX28DRAFT_1003 0.64 +1.2
1,009,678 - EX28DRAFT_1003 0.64 -0.9
1,009,748 - EX28DRAFT_1003 0.70 -0.5
1,009,927 + EX28DRAFT_1003 0.85 -1.7
1,009,968 + EX28DRAFT_1003 0.89 -0.5
1,009,968 + EX28DRAFT_1003 0.89 -0.6
1,009,969 - EX28DRAFT_1003 0.89 -0.2
1,009,969 - EX28DRAFT_1003 0.89 +0.5
1,010,182 + +0.0
1,010,182 + -0.4
1,010,182 + +0.0
1,010,182 + +0.4
1,010,182 + -0.4
1,010,182 + +0.4
1,010,183 - -0.2
1,010,183 - -0.0
1,010,183 - +1.0
1,010,183 - +0.2
1,010,183 - +0.0
1,010,211 - +0.3
1,010,230 - -0.3
1,010,258 + +0.6
1,010,340 - +0.1
1,010,374 + EX28DRAFT_1004 0.13 +1.3
1,010,385 + EX28DRAFT_1004 0.14 +0.3
1,010,574 + EX28DRAFT_1004 0.33 -0.2
1,010,846 + EX28DRAFT_1004 0.61 +0.5
1,010,847 - EX28DRAFT_1004 0.61 +0.7
1,011,049 - EX28DRAFT_1004 0.82 +0.2
1,011,051 - EX28DRAFT_1004 0.82 +0.1
1,011,175 + -0.5
1,011,176 - +0.7
1,011,316 + -0.0
1,011,316 + -0.1
1,011,317 - -0.1
1,011,317 - +0.5
1,011,367 - EX28DRAFT_1005 0.35 -0.4
1,011,374 + EX28DRAFT_1005 0.41 +0.2
1,011,375 - EX28DRAFT_1005 0.42 -0.3
1,011,399 - EX28DRAFT_1005 0.63 -0.0
1,011,710 + -1.3
1,012,088 + EX28DRAFT_1006 0.27 +0.1
1,012,088 + EX28DRAFT_1006 0.27 +0.2
1,012,088 + EX28DRAFT_1006 0.27 +0.3
1,012,089 - EX28DRAFT_1006 0.27 -0.6
1,012,154 - EX28DRAFT_1006 0.32 +0.2

Or see this region's nucleotide sequence