Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1003 and EX28DRAFT_1004 are separated by 154 nucleotides EX28DRAFT_1004 and EX28DRAFT_1005 are separated by 95 nucleotides EX28DRAFT_1005 and EX28DRAFT_1006 are separated by 272 nucleotides
EX28DRAFT_1003: EX28DRAFT_1003 - Methyl-accepting chemotaxis protein, at 1,008,950 to 1,010,092
_1003
EX28DRAFT_1004: EX28DRAFT_1004 - Mg2+ and Co2+ transporters, at 1,010,247 to 1,011,230
_1004
EX28DRAFT_1005: EX28DRAFT_1005 - RNA, at 1,011,326 to 1,011,441
_1005
EX28DRAFT_1006: EX28DRAFT_1006 - Superfamily II DNA and RNA helicases, at 1,011,714 to 1,013,087
_1006
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-1
0
1 at 1009.330 kb on + strand, within EX28DRAFT_1003 at 1009.520 kb on - strand, within EX28DRAFT_1003 at 1009.520 kb on - strand, within EX28DRAFT_1003 at 1009.562 kb on - strand, within EX28DRAFT_1003 at 1009.597 kb on + strand, within EX28DRAFT_1003 at 1009.678 kb on - strand, within EX28DRAFT_1003 at 1009.678 kb on - strand, within EX28DRAFT_1003 at 1009.748 kb on - strand, within EX28DRAFT_1003 at 1009.927 kb on + strand, within EX28DRAFT_1003 at 1009.968 kb on + strand, within EX28DRAFT_1003 at 1009.968 kb on + strand, within EX28DRAFT_1003 at 1009.969 kb on - strand, within EX28DRAFT_1003 at 1009.969 kb on - strand, within EX28DRAFT_1003 at 1010.182 kb on + strand at 1010.182 kb on + strand at 1010.182 kb on + strand at 1010.182 kb on + strand at 1010.182 kb on + strand at 1010.182 kb on + strand at 1010.183 kb on - strand at 1010.183 kb on - strand at 1010.183 kb on - strand at 1010.183 kb on - strand at 1010.183 kb on - strand at 1010.211 kb on - strand at 1010.230 kb on - strand at 1010.258 kb on + strand at 1010.340 kb on - strand at 1010.374 kb on + strand, within EX28DRAFT_1004 at 1010.385 kb on + strand, within EX28DRAFT_1004 at 1010.574 kb on + strand, within EX28DRAFT_1004 at 1010.846 kb on + strand, within EX28DRAFT_1004 at 1010.847 kb on - strand, within EX28DRAFT_1004 at 1011.049 kb on - strand, within EX28DRAFT_1004 at 1011.051 kb on - strand, within EX28DRAFT_1004 at 1011.175 kb on + strand at 1011.176 kb on - strand at 1011.316 kb on + strand at 1011.316 kb on + strand at 1011.317 kb on - strand at 1011.317 kb on - strand at 1011.367 kb on - strand, within EX28DRAFT_1005 at 1011.374 kb on + strand, within EX28DRAFT_1005 at 1011.375 kb on - strand, within EX28DRAFT_1005 at 1011.399 kb on - strand, within EX28DRAFT_1005 at 1011.710 kb on + strand at 1012.088 kb on + strand, within EX28DRAFT_1006 at 1012.088 kb on + strand, within EX28DRAFT_1006 at 1012.088 kb on + strand, within EX28DRAFT_1006 at 1012.089 kb on - strand, within EX28DRAFT_1006 at 1012.154 kb on - strand, within EX28DRAFT_1006
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,009,330 + EX28DRAFT_1003 0.33 +0.2 1,009,520 - EX28DRAFT_1003 0.50 +0.6 1,009,520 - EX28DRAFT_1003 0.50 +1.0 1,009,562 - EX28DRAFT_1003 0.54 +0.2 1,009,597 + EX28DRAFT_1003 0.57 +0.7 1,009,678 - EX28DRAFT_1003 0.64 +1.2 1,009,678 - EX28DRAFT_1003 0.64 -0.9 1,009,748 - EX28DRAFT_1003 0.70 -0.5 1,009,927 + EX28DRAFT_1003 0.85 -1.7 1,009,968 + EX28DRAFT_1003 0.89 -0.5 1,009,968 + EX28DRAFT_1003 0.89 -0.6 1,009,969 - EX28DRAFT_1003 0.89 -0.2 1,009,969 - EX28DRAFT_1003 0.89 +0.5 1,010,182 + +0.0 1,010,182 + -0.4 1,010,182 + +0.0 1,010,182 + +0.4 1,010,182 + -0.4 1,010,182 + +0.4 1,010,183 - -0.2 1,010,183 - -0.0 1,010,183 - +1.0 1,010,183 - +0.2 1,010,183 - +0.0 1,010,211 - +0.3 1,010,230 - -0.3 1,010,258 + +0.6 1,010,340 - +0.1 1,010,374 + EX28DRAFT_1004 0.13 +1.3 1,010,385 + EX28DRAFT_1004 0.14 +0.3 1,010,574 + EX28DRAFT_1004 0.33 -0.2 1,010,846 + EX28DRAFT_1004 0.61 +0.5 1,010,847 - EX28DRAFT_1004 0.61 +0.7 1,011,049 - EX28DRAFT_1004 0.82 +0.2 1,011,051 - EX28DRAFT_1004 0.82 +0.1 1,011,175 + -0.5 1,011,176 - +0.7 1,011,316 + -0.0 1,011,316 + -0.1 1,011,317 - -0.1 1,011,317 - +0.5 1,011,367 - EX28DRAFT_1005 0.35 -0.4 1,011,374 + EX28DRAFT_1005 0.41 +0.2 1,011,375 - EX28DRAFT_1005 0.42 -0.3 1,011,399 - EX28DRAFT_1005 0.63 -0.0 1,011,710 + -1.3 1,012,088 + EX28DRAFT_1006 0.27 +0.1 1,012,088 + EX28DRAFT_1006 0.27 +0.2 1,012,088 + EX28DRAFT_1006 0.27 +0.3 1,012,089 - EX28DRAFT_1006 0.27 -0.6 1,012,154 - EX28DRAFT_1006 0.32 +0.2
Or see this region's nucleotide sequence