Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0886

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0883 and EX28DRAFT_0884 overlap by 4 nucleotidesEX28DRAFT_0884 and EX28DRAFT_0885 are separated by 66 nucleotidesEX28DRAFT_0885 and EX28DRAFT_0886 are separated by 31 nucleotidesEX28DRAFT_0886 and EX28DRAFT_0887 overlap by 41 nucleotides EX28DRAFT_0883: EX28DRAFT_0883 - hypothetical protein, at 892,671 to 892,841 _0883 EX28DRAFT_0884: EX28DRAFT_0884 - hypothetical protein, at 892,838 to 893,338 _0884 EX28DRAFT_0885: EX28DRAFT_0885 - Protein of unknown function (DUF2732), at 893,405 to 893,614 _0885 EX28DRAFT_0886: EX28DRAFT_0886 - hypothetical protein, at 893,646 to 893,909 _0886 EX28DRAFT_0887: EX28DRAFT_0887 - Bacteriophage replication gene A protein (GPA), at 893,869 to 896,226 _0887 Position (kb) 893 894Strain fitness (log2 ratio) -2 -1 0 1 2at 892.671 kb on - strandat 892.766 kb on - strand, within EX28DRAFT_0883at 892.766 kb on - strand, within EX28DRAFT_0883at 892.904 kb on + strand, within EX28DRAFT_0884at 892.905 kb on - strand, within EX28DRAFT_0884at 892.996 kb on - strand, within EX28DRAFT_0884at 893.197 kb on + strand, within EX28DRAFT_0884at 893.198 kb on - strand, within EX28DRAFT_0884at 893.296 kb on + strandat 893.297 kb on - strandat 893.305 kb on - strandat 893.327 kb on + strandat 893.332 kb on - strandat 893.336 kb on + strandat 893.399 kb on - strandat 893.527 kb on + strand, within EX28DRAFT_0885at 893.569 kb on - strand, within EX28DRAFT_0885at 893.569 kb on - strand, within EX28DRAFT_0885at 893.572 kb on - strand, within EX28DRAFT_0885at 893.572 kb on - strand, within EX28DRAFT_0885at 893.572 kb on - strand, within EX28DRAFT_0885at 893.653 kb on + strandat 893.666 kb on + strandat 893.676 kb on + strand, within EX28DRAFT_0886at 893.677 kb on - strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.799 kb on - strand, within EX28DRAFT_0886at 893.904 kb on - strandat 893.907 kb on + strandat 893.908 kb on - strandat 893.910 kb on + strandat 893.996 kb on - strandat 893.996 kb on - strandat 894.124 kb on - strand, within EX28DRAFT_0887at 894.124 kb on - strand, within EX28DRAFT_0887at 894.124 kb on - strand, within EX28DRAFT_0887at 894.124 kb on - strand, within EX28DRAFT_0887at 894.133 kb on + strand, within EX28DRAFT_0887at 894.135 kb on + strand, within EX28DRAFT_0887at 894.135 kb on + strand, within EX28DRAFT_0887at 894.136 kb on - strand, within EX28DRAFT_0887at 894.164 kb on + strand, within EX28DRAFT_0887at 894.164 kb on + strand, within EX28DRAFT_0887at 894.176 kb on - strand, within EX28DRAFT_0887at 894.289 kb on + strand, within EX28DRAFT_0887at 894.289 kb on + strand, within EX28DRAFT_0887at 894.290 kb on - strand, within EX28DRAFT_0887at 894.306 kb on + strand, within EX28DRAFT_0887at 894.307 kb on - strand, within EX28DRAFT_0887at 894.345 kb on - strand, within EX28DRAFT_0887at 894.367 kb on + strand, within EX28DRAFT_0887at 894.378 kb on - strand, within EX28DRAFT_0887at 894.378 kb on - strand, within EX28DRAFT_0887at 894.447 kb on - strand, within EX28DRAFT_0887at 894.448 kb on + strand, within EX28DRAFT_0887at 894.645 kb on - strand, within EX28DRAFT_0887at 894.711 kb on + strand, within EX28DRAFT_0887at 894.765 kb on + strand, within EX28DRAFT_0887at 894.766 kb on - strand, within EX28DRAFT_0887at 894.795 kb on + strand, within EX28DRAFT_0887at 894.795 kb on + strand, within EX28DRAFT_0887at 894.813 kb on - strand, within EX28DRAFT_0887at 894.813 kb on - strand, within EX28DRAFT_0887at 894.837 kb on + strand, within EX28DRAFT_0887at 894.888 kb on + strand, within EX28DRAFT_0887at 894.889 kb on - strand, within EX28DRAFT_0887

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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892,671 - +0.3
892,766 - EX28DRAFT_0883 0.56 +0.5
892,766 - EX28DRAFT_0883 0.56 +0.7
892,904 + EX28DRAFT_0884 0.13 +1.1
892,905 - EX28DRAFT_0884 0.13 +0.2
892,996 - EX28DRAFT_0884 0.32 -0.7
893,197 + EX28DRAFT_0884 0.72 -2.3
893,198 - EX28DRAFT_0884 0.72 +0.4
893,296 + -0.0
893,297 - +0.2
893,305 - +0.6
893,327 + -1.4
893,332 - -0.2
893,336 + +0.2
893,399 - -0.2
893,527 + EX28DRAFT_0885 0.58 -2.6
893,569 - EX28DRAFT_0885 0.78 -0.1
893,569 - EX28DRAFT_0885 0.78 +0.4
893,572 - EX28DRAFT_0885 0.80 +0.1
893,572 - EX28DRAFT_0885 0.80 +2.1
893,572 - EX28DRAFT_0885 0.80 +0.1
893,653 + +1.9
893,666 + +1.2
893,676 + EX28DRAFT_0886 0.11 -0.3
893,677 - EX28DRAFT_0886 0.12 +1.0
893,798 + EX28DRAFT_0886 0.58 +0.9
893,798 + EX28DRAFT_0886 0.58 -0.5
893,798 + EX28DRAFT_0886 0.58 +0.7
893,798 + EX28DRAFT_0886 0.58 +0.9
893,798 + EX28DRAFT_0886 0.58 +0.6
893,799 - EX28DRAFT_0886 0.58 +1.9
893,904 - -0.5
893,907 + +0.2
893,908 - -0.1
893,910 + +1.1
893,996 - +0.2
893,996 - +0.1
894,124 - EX28DRAFT_0887 0.11 -0.5
894,124 - EX28DRAFT_0887 0.11 +1.3
894,124 - EX28DRAFT_0887 0.11 +0.1
894,124 - EX28DRAFT_0887 0.11 +0.3
894,133 + EX28DRAFT_0887 0.11 -0.2
894,135 + EX28DRAFT_0887 0.11 +0.6
894,135 + EX28DRAFT_0887 0.11 +0.0
894,136 - EX28DRAFT_0887 0.11 -0.4
894,164 + EX28DRAFT_0887 0.13 -0.2
894,164 + EX28DRAFT_0887 0.13 +0.3
894,176 - EX28DRAFT_0887 0.13 -0.3
894,289 + EX28DRAFT_0887 0.18 -0.1
894,289 + EX28DRAFT_0887 0.18 +0.1
894,290 - EX28DRAFT_0887 0.18 +0.7
894,306 + EX28DRAFT_0887 0.19 +0.2
894,307 - EX28DRAFT_0887 0.19 +0.3
894,345 - EX28DRAFT_0887 0.20 +0.1
894,367 + EX28DRAFT_0887 0.21 +0.7
894,378 - EX28DRAFT_0887 0.22 +0.6
894,378 - EX28DRAFT_0887 0.22 -0.3
894,447 - EX28DRAFT_0887 0.25 -1.1
894,448 + EX28DRAFT_0887 0.25 -0.1
894,645 - EX28DRAFT_0887 0.33 -0.3
894,711 + EX28DRAFT_0887 0.36 +0.1
894,765 + EX28DRAFT_0887 0.38 +0.6
894,766 - EX28DRAFT_0887 0.38 -0.2
894,795 + EX28DRAFT_0887 0.39 -1.4
894,795 + EX28DRAFT_0887 0.39 +1.0
894,813 - EX28DRAFT_0887 0.40 +0.1
894,813 - EX28DRAFT_0887 0.40 -1.2
894,837 + EX28DRAFT_0887 0.41 -0.9
894,888 + EX28DRAFT_0887 0.43 -0.3
894,889 - EX28DRAFT_0887 0.43 -0.1

Or see this region's nucleotide sequence