Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0789

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0788 and EX28DRAFT_0789 are separated by 17 nucleotidesEX28DRAFT_0789 and EX28DRAFT_0790 are separated by 2 nucleotides EX28DRAFT_0788: EX28DRAFT_0788 - type VI secretion protein, VC_A0114 family, at 787,000 to 788,343 _0788 EX28DRAFT_0789: EX28DRAFT_0789 - type VI secretion system peptidoglycan-associated domain, at 788,361 to 789,599 _0789 EX28DRAFT_0790: EX28DRAFT_0790 - type VI secretion protein IcmF, at 789,602 to 793,222 _0790 Position (kb) 788 789 790Strain fitness (log2 ratio) -3 -2 -1 0 1at 787.525 kb on - strand, within EX28DRAFT_0788at 787.555 kb on + strand, within EX28DRAFT_0788at 787.555 kb on + strand, within EX28DRAFT_0788at 787.556 kb on - strand, within EX28DRAFT_0788at 787.556 kb on - strand, within EX28DRAFT_0788at 787.556 kb on - strand, within EX28DRAFT_0788at 787.695 kb on + strand, within EX28DRAFT_0788at 787.752 kb on - strand, within EX28DRAFT_0788at 787.864 kb on + strand, within EX28DRAFT_0788at 788.155 kb on - strand, within EX28DRAFT_0788at 788.213 kb on - strandat 788.257 kb on - strandat 788.342 kb on - strandat 788.344 kb on + strandat 788.345 kb on - strandat 788.345 kb on - strandat 788.357 kb on + strandat 788.360 kb on + strandat 788.360 kb on + strandat 788.360 kb on + strandat 788.361 kb on - strandat 788.503 kb on + strand, within EX28DRAFT_0789at 788.756 kb on + strand, within EX28DRAFT_0789at 788.781 kb on + strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 788.782 kb on - strand, within EX28DRAFT_0789at 789.012 kb on + strand, within EX28DRAFT_0789at 789.024 kb on - strand, within EX28DRAFT_0789at 789.070 kb on - strand, within EX28DRAFT_0789at 789.070 kb on - strand, within EX28DRAFT_0789at 789.598 kb on - strandat 789.598 kb on - strandat 789.745 kb on + strandat 789.748 kb on + strandat 789.749 kb on - strandat 789.767 kb on + strandat 789.768 kb on - strandat 789.768 kb on - strandat 789.807 kb on - strandat 789.807 kb on - strandat 790.010 kb on + strand, within EX28DRAFT_0790at 790.010 kb on + strand, within EX28DRAFT_0790at 790.017 kb on - strand, within EX28DRAFT_0790at 790.031 kb on + strand, within EX28DRAFT_0790at 790.032 kb on - strand, within EX28DRAFT_0790at 790.039 kb on + strand, within EX28DRAFT_0790at 790.207 kb on + strand, within EX28DRAFT_0790at 790.208 kb on - strand, within EX28DRAFT_0790at 790.273 kb on + strand, within EX28DRAFT_0790at 790.274 kb on - strand, within EX28DRAFT_0790at 790.274 kb on - strand, within EX28DRAFT_0790at 790.430 kb on + strand, within EX28DRAFT_0790at 790.557 kb on - strand, within EX28DRAFT_0790

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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787,525 - EX28DRAFT_0788 0.39 -0.1
787,555 + EX28DRAFT_0788 0.41 -2.9
787,555 + EX28DRAFT_0788 0.41 -0.2
787,556 - EX28DRAFT_0788 0.41 +0.9
787,556 - EX28DRAFT_0788 0.41 +0.4
787,556 - EX28DRAFT_0788 0.41 +0.9
787,695 + EX28DRAFT_0788 0.52 +0.1
787,752 - EX28DRAFT_0788 0.56 +0.6
787,864 + EX28DRAFT_0788 0.64 -0.2
788,155 - EX28DRAFT_0788 0.86 -0.2
788,213 - +0.2
788,257 - +1.1
788,342 - +1.6
788,344 + -2.2
788,345 - +0.6
788,345 - -0.1
788,357 + +0.1
788,360 + +0.8
788,360 + +0.3
788,360 + -0.2
788,361 - -0.1
788,503 + EX28DRAFT_0789 0.11 +0.5
788,756 + EX28DRAFT_0789 0.32 +0.4
788,781 + EX28DRAFT_0789 0.34 -0.4
788,782 - EX28DRAFT_0789 0.34 +1.5
788,782 - EX28DRAFT_0789 0.34 -0.1
788,782 - EX28DRAFT_0789 0.34 +0.9
788,782 - EX28DRAFT_0789 0.34 +0.0
789,012 + EX28DRAFT_0789 0.53 +0.2
789,024 - EX28DRAFT_0789 0.54 +0.7
789,070 - EX28DRAFT_0789 0.57 +0.4
789,070 - EX28DRAFT_0789 0.57 +0.1
789,598 - -0.4
789,598 - -0.1
789,745 + -0.2
789,748 + -0.6
789,749 - -0.3
789,767 + -0.9
789,768 - -0.9
789,768 - -0.0
789,807 - -0.0
789,807 - +0.6
790,010 + EX28DRAFT_0790 0.11 +0.4
790,010 + EX28DRAFT_0790 0.11 -1.9
790,017 - EX28DRAFT_0790 0.11 +0.3
790,031 + EX28DRAFT_0790 0.12 -0.4
790,032 - EX28DRAFT_0790 0.12 -0.1
790,039 + EX28DRAFT_0790 0.12 +0.8
790,207 + EX28DRAFT_0790 0.17 -0.1
790,208 - EX28DRAFT_0790 0.17 +0.0
790,273 + EX28DRAFT_0790 0.19 +0.0
790,274 - EX28DRAFT_0790 0.19 -0.1
790,274 - EX28DRAFT_0790 0.19 +0.3
790,430 + EX28DRAFT_0790 0.23 -0.6
790,557 - EX28DRAFT_0790 0.26 +0.3

Or see this region's nucleotide sequence