Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0786 and EX28DRAFT_0787 are separated by 23 nucleotides EX28DRAFT_0787 and EX28DRAFT_0788 are separated by 28 nucleotides
EX28DRAFT_0786: EX28DRAFT_0786 - hypothetical protein, at 785,950 to 786,444
_0786
EX28DRAFT_0787: EX28DRAFT_0787 - type VI secretion lipoprotein, VC_A0113 family, at 786,468 to 786,971
_0787
EX28DRAFT_0788: EX28DRAFT_0788 - type VI secretion protein, VC_A0114 family, at 787,000 to 788,343
_0788
Position (kb) 786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 785.507 kb on + strand at 785.508 kb on - strand at 785.509 kb on + strand at 785.509 kb on + strand at 785.510 kb on - strand at 785.510 kb on - strand at 785.693 kb on + strand at 785.716 kb on + strand at 785.717 kb on - strand at 785.727 kb on - strand at 785.740 kb on + strand at 785.764 kb on + strand at 785.764 kb on + strand at 785.765 kb on - strand at 785.765 kb on - strand at 785.765 kb on - strand at 785.789 kb on + strand at 785.813 kb on - strand at 785.834 kb on - strand at 785.837 kb on + strand at 785.837 kb on + strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.838 kb on - strand at 785.882 kb on - strand at 785.888 kb on - strand at 785.888 kb on - strand at 785.894 kb on + strand at 785.894 kb on + strand at 785.895 kb on - strand at 785.895 kb on - strand at 785.895 kb on - strand at 785.915 kb on - strand at 785.949 kb on + strand at 785.949 kb on + strand at 785.985 kb on - strand at 786.036 kb on + strand, within EX28DRAFT_0786 at 786.036 kb on + strand, within EX28DRAFT_0786 at 786.139 kb on + strand, within EX28DRAFT_0786 at 786.140 kb on - strand, within EX28DRAFT_0786 at 786.211 kb on + strand, within EX28DRAFT_0786 at 786.211 kb on + strand, within EX28DRAFT_0786 at 786.284 kb on - strand, within EX28DRAFT_0786 at 786.337 kb on - strand, within EX28DRAFT_0786 at 786.345 kb on + strand, within EX28DRAFT_0786 at 786.346 kb on - strand, within EX28DRAFT_0786 at 786.442 kb on + strand at 786.442 kb on + strand at 786.507 kb on + strand at 786.620 kb on + strand, within EX28DRAFT_0787 at 786.621 kb on - strand, within EX28DRAFT_0787 at 786.675 kb on + strand, within EX28DRAFT_0787 at 786.676 kb on - strand, within EX28DRAFT_0787 at 786.676 kb on - strand, within EX28DRAFT_0787 at 786.799 kb on - strand, within EX28DRAFT_0787 at 786.884 kb on + strand, within EX28DRAFT_0787 at 786.884 kb on + strand, within EX28DRAFT_0787 at 786.884 kb on + strand, within EX28DRAFT_0787 at 786.885 kb on - strand, within EX28DRAFT_0787 at 786.885 kb on - strand, within EX28DRAFT_0787 at 786.888 kb on + strand, within EX28DRAFT_0787 at 786.889 kb on - strand, within EX28DRAFT_0787 at 787.075 kb on + strand at 787.076 kb on - strand at 787.110 kb on - strand at 787.120 kb on + strand at 787.121 kb on - strand at 787.121 kb on - strand at 787.121 kb on - strand at 787.121 kb on - strand at 787.189 kb on + strand, within EX28DRAFT_0788 at 787.189 kb on + strand, within EX28DRAFT_0788 at 787.190 kb on - strand, within EX28DRAFT_0788 at 787.190 kb on - strand, within EX28DRAFT_0788 at 787.525 kb on - strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.695 kb on + strand, within EX28DRAFT_0788 at 787.752 kb on - strand, within EX28DRAFT_0788 at 787.864 kb on + strand, within EX28DRAFT_0788
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 785,507 + +0.2 785,508 - -0.8 785,509 + -0.6 785,509 + -0.4 785,510 - +0.5 785,510 - -1.7 785,693 + -0.3 785,716 + -0.1 785,717 - +1.0 785,727 - +0.1 785,740 + -0.8 785,764 + -0.5 785,764 + +0.2 785,765 - +0.0 785,765 - -0.1 785,765 - +0.3 785,789 + +0.4 785,813 - +0.6 785,834 - -0.5 785,837 + +0.5 785,837 + +0.2 785,838 - +0.4 785,838 - +1.5 785,838 - +1.4 785,838 - -0.6 785,838 - +0.3 785,882 - +0.3 785,888 - +0.5 785,888 - -0.0 785,894 + -0.0 785,894 + -1.0 785,895 - +0.6 785,895 - -0.1 785,895 - +2.1 785,915 - +0.7 785,949 + +1.0 785,949 + +1.8 785,985 - +0.8 786,036 + EX28DRAFT_0786 0.17 +0.3 786,036 + EX28DRAFT_0786 0.17 +0.4 786,139 + EX28DRAFT_0786 0.38 -0.2 786,140 - EX28DRAFT_0786 0.38 +0.3 786,211 + EX28DRAFT_0786 0.53 +0.4 786,211 + EX28DRAFT_0786 0.53 +0.1 786,284 - EX28DRAFT_0786 0.67 +0.1 786,337 - EX28DRAFT_0786 0.78 -0.7 786,345 + EX28DRAFT_0786 0.80 +0.5 786,346 - EX28DRAFT_0786 0.80 -0.1 786,442 + +0.3 786,442 + +0.2 786,507 + +0.4 786,620 + EX28DRAFT_0787 0.30 +0.7 786,621 - EX28DRAFT_0787 0.30 +0.4 786,675 + EX28DRAFT_0787 0.41 +1.0 786,676 - EX28DRAFT_0787 0.41 +0.1 786,676 - EX28DRAFT_0787 0.41 -0.2 786,799 - EX28DRAFT_0787 0.66 -0.3 786,884 + EX28DRAFT_0787 0.83 +0.8 786,884 + EX28DRAFT_0787 0.83 -1.1 786,884 + EX28DRAFT_0787 0.83 -0.0 786,885 - EX28DRAFT_0787 0.83 +0.3 786,885 - EX28DRAFT_0787 0.83 +0.5 786,888 + EX28DRAFT_0787 0.83 +0.2 786,889 - EX28DRAFT_0787 0.84 +1.1 787,075 + +0.4 787,076 - +0.2 787,110 - +0.6 787,120 + +0.1 787,121 - -0.3 787,121 - +0.5 787,121 - +0.4 787,121 - -0.3 787,189 + EX28DRAFT_0788 0.14 -0.2 787,189 + EX28DRAFT_0788 0.14 +0.3 787,190 - EX28DRAFT_0788 0.14 +0.7 787,190 - EX28DRAFT_0788 0.14 +0.2 787,525 - EX28DRAFT_0788 0.39 -0.1 787,555 + EX28DRAFT_0788 0.41 -2.9 787,555 + EX28DRAFT_0788 0.41 -0.2 787,556 - EX28DRAFT_0788 0.41 +0.9 787,556 - EX28DRAFT_0788 0.41 +0.4 787,556 - EX28DRAFT_0788 0.41 +0.9 787,695 + EX28DRAFT_0788 0.52 +0.1 787,752 - EX28DRAFT_0788 0.56 +0.6 787,864 + EX28DRAFT_0788 0.64 -0.2
Or see this region's nucleotide sequence