Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0753

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0751 and EX28DRAFT_0752 are separated by 37 nucleotidesEX28DRAFT_0752 and EX28DRAFT_0753 are separated by 170 nucleotidesEX28DRAFT_0753 and EX28DRAFT_0754 overlap by 42 nucleotidesEX28DRAFT_0754 and EX28DRAFT_0755 are separated by 26 nucleotides EX28DRAFT_0751: EX28DRAFT_0751 - tRNA threonylcarbamoyl adenosine modification protein YeaZ, at 749,478 to 750,173 _0751 EX28DRAFT_0752: EX28DRAFT_0752 - outer membrane lipoprotein, Slp family, at 750,211 to 750,792 _0752 EX28DRAFT_0753: EX28DRAFT_0753 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 750,963 to 752,681 _0753 EX28DRAFT_0754: EX28DRAFT_0754 - RNA, at 752,640 to 752,726 _0754 EX28DRAFT_0755: EX28DRAFT_0755 - ribonuclease D, at 752,753 to 753,880 _0755 Position (kb) 750 751 752 753Strain fitness (log2 ratio) -2 -1 0 1at 750.230 kb on + strandat 750.230 kb on + strandat 750.230 kb on + strandat 750.231 kb on - strandat 750.231 kb on - strandat 750.231 kb on - strandat 750.231 kb on - strandat 750.234 kb on - strandat 750.300 kb on + strand, within EX28DRAFT_0752at 750.498 kb on + strand, within EX28DRAFT_0752at 750.498 kb on + strand, within EX28DRAFT_0752at 750.502 kb on + strand, within EX28DRAFT_0752at 750.640 kb on + strand, within EX28DRAFT_0752at 750.748 kb on + strandat 750.749 kb on - strandat 750.796 kb on - strandat 750.904 kb on - strandat 751.167 kb on - strand, within EX28DRAFT_0753at 751.276 kb on + strand, within EX28DRAFT_0753at 751.276 kb on + strand, within EX28DRAFT_0753at 751.317 kb on + strand, within EX28DRAFT_0753at 751.318 kb on - strand, within EX28DRAFT_0753at 751.318 kb on - strand, within EX28DRAFT_0753at 751.503 kb on + strand, within EX28DRAFT_0753at 751.503 kb on + strand, within EX28DRAFT_0753at 751.504 kb on - strand, within EX28DRAFT_0753at 751.528 kb on - strand, within EX28DRAFT_0753at 751.528 kb on - strand, within EX28DRAFT_0753at 751.580 kb on + strand, within EX28DRAFT_0753at 751.587 kb on + strand, within EX28DRAFT_0753at 751.588 kb on - strand, within EX28DRAFT_0753at 751.633 kb on - strand, within EX28DRAFT_0753at 751.686 kb on - strand, within EX28DRAFT_0753at 751.720 kb on - strand, within EX28DRAFT_0753at 751.772 kb on - strand, within EX28DRAFT_0753at 751.772 kb on - strand, within EX28DRAFT_0753at 751.772 kb on - strand, within EX28DRAFT_0753at 751.811 kb on + strand, within EX28DRAFT_0753at 751.812 kb on - strand, within EX28DRAFT_0753at 752.050 kb on - strand, within EX28DRAFT_0753at 752.050 kb on - strand, within EX28DRAFT_0753at 752.247 kb on + strand, within EX28DRAFT_0753at 752.418 kb on - strand, within EX28DRAFT_0753at 752.491 kb on + strand, within EX28DRAFT_0753at 752.492 kb on - strand, within EX28DRAFT_0753at 752.492 kb on - strand, within EX28DRAFT_0753at 752.492 kb on - strand, within EX28DRAFT_0753at 752.492 kb on - strand, within EX28DRAFT_0753at 752.641 kb on + strandat 752.642 kb on - strandat 752.665 kb on + strandat 752.672 kb on + strandat 752.673 kb on - strandat 752.865 kb on - strandat 752.892 kb on - strand, within EX28DRAFT_0755at 752.899 kb on + strand, within EX28DRAFT_0755at 752.985 kb on - strand, within EX28DRAFT_0755at 753.126 kb on - strand, within EX28DRAFT_0755at 753.127 kb on + strand, within EX28DRAFT_0755at 753.204 kb on - strand, within EX28DRAFT_0755at 753.224 kb on + strand, within EX28DRAFT_0755at 753.383 kb on - strand, within EX28DRAFT_0755at 753.501 kb on - strand, within EX28DRAFT_0755at 753.502 kb on + strand, within EX28DRAFT_0755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
750,230 + -0.4
750,230 + +0.6
750,230 + +0.3
750,231 - +0.8
750,231 - -0.2
750,231 - +0.1
750,231 - -0.5
750,234 - +0.5
750,300 + EX28DRAFT_0752 0.15 -0.7
750,498 + EX28DRAFT_0752 0.49 +0.2
750,498 + EX28DRAFT_0752 0.49 -0.8
750,502 + EX28DRAFT_0752 0.50 +0.5
750,640 + EX28DRAFT_0752 0.74 +0.5
750,748 + -0.5
750,749 - -0.9
750,796 - +0.7
750,904 - -0.0
751,167 - EX28DRAFT_0753 0.12 -1.1
751,276 + EX28DRAFT_0753 0.18 -0.2
751,276 + EX28DRAFT_0753 0.18 +0.5
751,317 + EX28DRAFT_0753 0.21 +0.5
751,318 - EX28DRAFT_0753 0.21 +1.4
751,318 - EX28DRAFT_0753 0.21 +0.9
751,503 + EX28DRAFT_0753 0.31 +0.4
751,503 + EX28DRAFT_0753 0.31 +0.1
751,504 - EX28DRAFT_0753 0.31 +0.4
751,528 - EX28DRAFT_0753 0.33 -0.7
751,528 - EX28DRAFT_0753 0.33 -0.1
751,580 + EX28DRAFT_0753 0.36 +0.2
751,587 + EX28DRAFT_0753 0.36 +0.7
751,588 - EX28DRAFT_0753 0.36 +0.4
751,633 - EX28DRAFT_0753 0.39 +0.4
751,686 - EX28DRAFT_0753 0.42 -0.1
751,720 - EX28DRAFT_0753 0.44 +1.2
751,772 - EX28DRAFT_0753 0.47 +0.5
751,772 - EX28DRAFT_0753 0.47 +0.9
751,772 - EX28DRAFT_0753 0.47 +0.3
751,811 + EX28DRAFT_0753 0.49 +0.9
751,812 - EX28DRAFT_0753 0.49 +0.3
752,050 - EX28DRAFT_0753 0.63 -0.2
752,050 - EX28DRAFT_0753 0.63 +0.0
752,247 + EX28DRAFT_0753 0.75 +0.6
752,418 - EX28DRAFT_0753 0.85 -0.7
752,491 + EX28DRAFT_0753 0.89 +0.6
752,492 - EX28DRAFT_0753 0.89 +0.2
752,492 - EX28DRAFT_0753 0.89 -0.6
752,492 - EX28DRAFT_0753 0.89 +0.5
752,492 - EX28DRAFT_0753 0.89 -0.2
752,641 + +0.2
752,642 - +0.8
752,665 + -0.1
752,672 + +0.1
752,673 - -0.5
752,865 - +0.5
752,892 - EX28DRAFT_0755 0.12 +0.4
752,899 + EX28DRAFT_0755 0.13 -2.4
752,985 - EX28DRAFT_0755 0.21 +0.1
753,126 - EX28DRAFT_0755 0.33 -0.6
753,127 + EX28DRAFT_0755 0.33 +0.6
753,204 - EX28DRAFT_0755 0.40 +1.4
753,224 + EX28DRAFT_0755 0.42 +0.8
753,383 - EX28DRAFT_0755 0.56 +0.2
753,501 - EX28DRAFT_0755 0.66 -0.2
753,502 + EX28DRAFT_0755 0.66 -0.1

Or see this region's nucleotide sequence