Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0474 and EX28DRAFT_0475 are separated by 56 nucleotides EX28DRAFT_0475 and EX28DRAFT_0476 are separated by 141 nucleotides EX28DRAFT_0476 and EX28DRAFT_0477 overlap by 6 nucleotides EX28DRAFT_0477 and EX28DRAFT_0478 are separated by 82 nucleotides
EX28DRAFT_0474: EX28DRAFT_0474 - DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes, at 457,463 to 458,515
_0474
EX28DRAFT_0475: EX28DRAFT_0475 - lipid kinase YegS, at 458,572 to 459,471
_0475
EX28DRAFT_0476: EX28DRAFT_0476 - Uncharacterized conserved protein, at 459,613 to 460,113
_0476
EX28DRAFT_0477: EX28DRAFT_0477 - RNA, at 460,108 to 460,192
_0477
EX28DRAFT_0478: EX28DRAFT_0478 - Collagenase and related proteases, at 460,275 to 461,636
_0478
Position (kb) 458
459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 457.618 kb on + strand, within EX28DRAFT_0474 at 457.632 kb on - strand, within EX28DRAFT_0474 at 457.670 kb on - strand, within EX28DRAFT_0474 at 457.800 kb on - strand, within EX28DRAFT_0474 at 457.879 kb on + strand, within EX28DRAFT_0474 at 457.880 kb on - strand, within EX28DRAFT_0474 at 457.884 kb on - strand, within EX28DRAFT_0474 at 457.967 kb on + strand, within EX28DRAFT_0474 at 458.098 kb on - strand, within EX28DRAFT_0474 at 458.103 kb on - strand, within EX28DRAFT_0474 at 458.109 kb on + strand, within EX28DRAFT_0474 at 458.300 kb on + strand, within EX28DRAFT_0474 at 458.301 kb on - strand, within EX28DRAFT_0474 at 458.323 kb on + strand, within EX28DRAFT_0474 at 458.387 kb on - strand, within EX28DRAFT_0474 at 458.486 kb on + strand at 458.486 kb on + strand at 458.486 kb on + strand at 458.487 kb on - strand at 458.682 kb on + strand, within EX28DRAFT_0475 at 458.731 kb on - strand, within EX28DRAFT_0475 at 458.731 kb on - strand, within EX28DRAFT_0475 at 458.761 kb on - strand, within EX28DRAFT_0475 at 458.761 kb on - strand, within EX28DRAFT_0475 at 458.761 kb on - strand, within EX28DRAFT_0475 at 458.981 kb on + strand, within EX28DRAFT_0475 at 458.982 kb on - strand, within EX28DRAFT_0475 at 459.066 kb on + strand, within EX28DRAFT_0475 at 459.067 kb on - strand, within EX28DRAFT_0475 at 459.067 kb on - strand, within EX28DRAFT_0475 at 459.067 kb on - strand, within EX28DRAFT_0475 at 459.079 kb on - strand, within EX28DRAFT_0475 at 459.079 kb on - strand, within EX28DRAFT_0475 at 459.324 kb on + strand, within EX28DRAFT_0475 at 459.327 kb on - strand, within EX28DRAFT_0475 at 459.327 kb on - strand, within EX28DRAFT_0475 at 459.499 kb on + strand at 459.507 kb on + strand at 459.508 kb on - strand at 459.508 kb on - strand at 459.509 kb on + strand at 459.556 kb on + strand at 459.557 kb on - strand at 459.573 kb on + strand at 459.597 kb on + strand at 459.598 kb on - strand at 459.664 kb on + strand, within EX28DRAFT_0476 at 459.768 kb on - strand, within EX28DRAFT_0476 at 459.789 kb on + strand, within EX28DRAFT_0476 at 459.790 kb on - strand, within EX28DRAFT_0476 at 459.813 kb on - strand, within EX28DRAFT_0476 at 459.813 kb on - strand, within EX28DRAFT_0476 at 459.930 kb on - strand, within EX28DRAFT_0476 at 459.930 kb on - strand, within EX28DRAFT_0476 at 459.930 kb on - strand, within EX28DRAFT_0476 at 459.967 kb on - strand, within EX28DRAFT_0476 at 459.970 kb on + strand, within EX28DRAFT_0476 at 459.971 kb on - strand, within EX28DRAFT_0476 at 460.112 kb on - strand at 460.131 kb on + strand, within EX28DRAFT_0477 at 460.141 kb on - strand, within EX28DRAFT_0477 at 460.164 kb on + strand, within EX28DRAFT_0477 at 460.201 kb on + strand at 460.272 kb on + strand at 460.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 457,618 + EX28DRAFT_0474 0.15 -0.5 457,632 - EX28DRAFT_0474 0.16 +0.0 457,670 - EX28DRAFT_0474 0.20 +0.0 457,800 - EX28DRAFT_0474 0.32 +0.8 457,879 + EX28DRAFT_0474 0.40 +0.2 457,880 - EX28DRAFT_0474 0.40 +0.1 457,884 - EX28DRAFT_0474 0.40 +0.2 457,967 + EX28DRAFT_0474 0.48 -0.3 458,098 - EX28DRAFT_0474 0.60 +0.3 458,103 - EX28DRAFT_0474 0.61 +0.4 458,109 + EX28DRAFT_0474 0.61 -0.4 458,300 + EX28DRAFT_0474 0.79 -0.3 458,301 - EX28DRAFT_0474 0.80 +0.0 458,323 + EX28DRAFT_0474 0.82 -0.3 458,387 - EX28DRAFT_0474 0.88 +0.2 458,486 + +0.3 458,486 + -0.6 458,486 + -0.1 458,487 - -0.1 458,682 + EX28DRAFT_0475 0.12 +1.2 458,731 - EX28DRAFT_0475 0.18 +0.4 458,731 - EX28DRAFT_0475 0.18 -0.2 458,761 - EX28DRAFT_0475 0.21 +0.6 458,761 - EX28DRAFT_0475 0.21 +0.5 458,761 - EX28DRAFT_0475 0.21 +0.8 458,981 + EX28DRAFT_0475 0.45 -0.0 458,982 - EX28DRAFT_0475 0.46 +1.4 459,066 + EX28DRAFT_0475 0.55 -0.4 459,067 - EX28DRAFT_0475 0.55 +0.3 459,067 - EX28DRAFT_0475 0.55 -1.1 459,067 - EX28DRAFT_0475 0.55 +0.0 459,079 - EX28DRAFT_0475 0.56 +0.3 459,079 - EX28DRAFT_0475 0.56 -0.0 459,324 + EX28DRAFT_0475 0.84 -0.9 459,327 - EX28DRAFT_0475 0.84 -0.2 459,327 - EX28DRAFT_0475 0.84 -0.2 459,499 + +0.3 459,507 + -0.3 459,508 - +0.0 459,508 - -0.4 459,509 + +0.4 459,556 + -1.7 459,557 - +0.1 459,573 + -2.4 459,597 + -1.0 459,598 - -1.0 459,664 + EX28DRAFT_0476 0.10 +0.9 459,768 - EX28DRAFT_0476 0.31 +0.1 459,789 + EX28DRAFT_0476 0.35 -0.5 459,790 - EX28DRAFT_0476 0.35 -1.5 459,813 - EX28DRAFT_0476 0.40 +0.1 459,813 - EX28DRAFT_0476 0.40 -0.0 459,930 - EX28DRAFT_0476 0.63 -0.6 459,930 - EX28DRAFT_0476 0.63 +0.0 459,930 - EX28DRAFT_0476 0.63 +0.2 459,967 - EX28DRAFT_0476 0.71 -0.2 459,970 + EX28DRAFT_0476 0.71 +0.0 459,971 - EX28DRAFT_0476 0.71 +0.1 460,112 - -0.7 460,131 + EX28DRAFT_0477 0.27 -0.0 460,141 - EX28DRAFT_0477 0.39 -0.7 460,164 + EX28DRAFT_0477 0.66 +0.9 460,201 + -0.1 460,272 + +2.1 460,277 - +0.9
Or see this region's nucleotide sequence