Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0435

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0432 and EX28DRAFT_0433 overlap by 17 nucleotidesEX28DRAFT_0433 and EX28DRAFT_0434 overlap by 26 nucleotidesEX28DRAFT_0434 and EX28DRAFT_0435 are separated by 69 nucleotidesEX28DRAFT_0435 and EX28DRAFT_0436 are separated by 217 nucleotides EX28DRAFT_0432: EX28DRAFT_0432 - ABC-type proline/glycine betaine transport systems, ATPase components, at 413,569 to 414,519 _0432 EX28DRAFT_0433: EX28DRAFT_0433 - ABC-type proline/glycine betaine transport systems, permease component, at 414,503 to 415,240 _0433 EX28DRAFT_0434: EX28DRAFT_0434 - hypothetical protein, at 415,215 to 415,328 _0434 EX28DRAFT_0435: EX28DRAFT_0435 - Predicted transcriptional regulators, at 415,398 to 416,138 _0435 EX28DRAFT_0436: EX28DRAFT_0436 - Putative regulator of cell autolysis, at 416,356 to 418,041 _0436 Position (kb) 415 416 417Strain fitness (log2 ratio) -2 -1 0 1at 414.640 kb on + strand, within EX28DRAFT_0433at 414.641 kb on - strand, within EX28DRAFT_0433at 414.641 kb on - strand, within EX28DRAFT_0433at 414.643 kb on + strand, within EX28DRAFT_0433at 414.936 kb on + strand, within EX28DRAFT_0433at 415.106 kb on - strand, within EX28DRAFT_0433at 415.108 kb on - strand, within EX28DRAFT_0433at 415.129 kb on + strand, within EX28DRAFT_0433at 415.137 kb on - strand, within EX28DRAFT_0433at 415.137 kb on - strand, within EX28DRAFT_0433at 415.211 kb on + strandat 415.304 kb on + strand, within EX28DRAFT_0434at 415.357 kb on + strandat 415.358 kb on - strandat 415.358 kb on - strandat 415.389 kb on + strandat 415.389 kb on + strandat 415.390 kb on - strandat 415.533 kb on - strand, within EX28DRAFT_0435at 415.693 kb on + strand, within EX28DRAFT_0435at 415.693 kb on + strand, within EX28DRAFT_0435at 415.693 kb on + strand, within EX28DRAFT_0435at 415.693 kb on + strand, within EX28DRAFT_0435at 415.694 kb on - strand, within EX28DRAFT_0435at 415.694 kb on - strand, within EX28DRAFT_0435at 415.694 kb on - strand, within EX28DRAFT_0435at 416.049 kb on - strand, within EX28DRAFT_0435at 416.049 kb on - strand, within EX28DRAFT_0435at 416.121 kb on + strandat 416.121 kb on + strandat 416.122 kb on - strandat 416.128 kb on + strandat 416.170 kb on - strandat 416.175 kb on + strandat 416.175 kb on + strandat 416.175 kb on + strandat 416.306 kb on - strandat 416.322 kb on - strandat 416.322 kb on - strandat 416.355 kb on + strandat 416.355 kb on + strandat 416.355 kb on + strandat 416.359 kb on + strandat 416.359 kb on + strandat 416.359 kb on + strandat 416.469 kb on - strandat 416.482 kb on - strandat 416.508 kb on + strandat 416.734 kb on + strand, within EX28DRAFT_0436at 416.734 kb on + strand, within EX28DRAFT_0436at 416.734 kb on + strand, within EX28DRAFT_0436at 416.734 kb on + strand, within EX28DRAFT_0436at 416.735 kb on - strand, within EX28DRAFT_0436at 416.735 kb on - strand, within EX28DRAFT_0436at 416.735 kb on - strand, within EX28DRAFT_0436at 416.735 kb on - strand, within EX28DRAFT_0436at 416.878 kb on - strand, within EX28DRAFT_0436at 416.898 kb on - strand, within EX28DRAFT_0436at 416.931 kb on + strand, within EX28DRAFT_0436at 416.932 kb on - strand, within EX28DRAFT_0436at 416.932 kb on - strand, within EX28DRAFT_0436at 416.965 kb on + strand, within EX28DRAFT_0436at 416.965 kb on + strand, within EX28DRAFT_0436at 416.965 kb on + strand, within EX28DRAFT_0436at 416.966 kb on - strand, within EX28DRAFT_0436at 416.966 kb on - strand, within EX28DRAFT_0436at 416.966 kb on - strand, within EX28DRAFT_0436at 416.967 kb on + strand, within EX28DRAFT_0436at 416.968 kb on - strand, within EX28DRAFT_0436at 417.036 kb on + strand, within EX28DRAFT_0436at 417.073 kb on + strand, within EX28DRAFT_0436

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
414,640 + EX28DRAFT_0433 0.19 -0.2
414,641 - EX28DRAFT_0433 0.19 -0.1
414,641 - EX28DRAFT_0433 0.19 +0.4
414,643 + EX28DRAFT_0433 0.19 -0.5
414,936 + EX28DRAFT_0433 0.59 +0.8
415,106 - EX28DRAFT_0433 0.82 -0.8
415,108 - EX28DRAFT_0433 0.82 -0.4
415,129 + EX28DRAFT_0433 0.85 -0.8
415,137 - EX28DRAFT_0433 0.86 +0.9
415,137 - EX28DRAFT_0433 0.86 +0.4
415,211 + +0.6
415,304 + EX28DRAFT_0434 0.78 -0.1
415,357 + +0.2
415,358 - +0.4
415,358 - -0.4
415,389 + -0.2
415,389 + +0.4
415,390 - +0.5
415,533 - EX28DRAFT_0435 0.18 -1.0
415,693 + EX28DRAFT_0435 0.40 +0.5
415,693 + EX28DRAFT_0435 0.40 -1.7
415,693 + EX28DRAFT_0435 0.40 +0.4
415,693 + EX28DRAFT_0435 0.40 +0.1
415,694 - EX28DRAFT_0435 0.40 -1.3
415,694 - EX28DRAFT_0435 0.40 +0.9
415,694 - EX28DRAFT_0435 0.40 -1.2
416,049 - EX28DRAFT_0435 0.88 +0.4
416,049 - EX28DRAFT_0435 0.88 -0.9
416,121 + -0.6
416,121 + +0.3
416,122 - +0.6
416,128 + -0.2
416,170 - -0.3
416,175 + -0.0
416,175 + +1.2
416,175 + +0.3
416,306 - +0.2
416,322 - +0.0
416,322 - +1.3
416,355 + -2.5
416,355 + -0.0
416,355 + -0.5
416,359 + +1.3
416,359 + -0.6
416,359 + -0.0
416,469 - -2.3
416,482 - +0.7
416,508 + +0.1
416,734 + EX28DRAFT_0436 0.22 +0.1
416,734 + EX28DRAFT_0436 0.22 +0.3
416,734 + EX28DRAFT_0436 0.22 +1.4
416,734 + EX28DRAFT_0436 0.22 +0.9
416,735 - EX28DRAFT_0436 0.22 +0.3
416,735 - EX28DRAFT_0436 0.22 -0.2
416,735 - EX28DRAFT_0436 0.22 +0.3
416,735 - EX28DRAFT_0436 0.22 +0.5
416,878 - EX28DRAFT_0436 0.31 +1.1
416,898 - EX28DRAFT_0436 0.32 +0.0
416,931 + EX28DRAFT_0436 0.34 +1.3
416,932 - EX28DRAFT_0436 0.34 -0.1
416,932 - EX28DRAFT_0436 0.34 -1.1
416,965 + EX28DRAFT_0436 0.36 +0.0
416,965 + EX28DRAFT_0436 0.36 -0.9
416,965 + EX28DRAFT_0436 0.36 +0.3
416,966 - EX28DRAFT_0436 0.36 +1.1
416,966 - EX28DRAFT_0436 0.36 -1.9
416,966 - EX28DRAFT_0436 0.36 -1.0
416,967 + EX28DRAFT_0436 0.36 -0.2
416,968 - EX28DRAFT_0436 0.36 -0.6
417,036 + EX28DRAFT_0436 0.40 +1.1
417,073 + EX28DRAFT_0436 0.43 -0.4

Or see this region's nucleotide sequence