Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0421 and EX28DRAFT_0422 are separated by 326 nucleotides EX28DRAFT_0422 and EX28DRAFT_0423 are separated by 50 nucleotides EX28DRAFT_0423 and EX28DRAFT_0424 are separated by 84 nucleotides
EX28DRAFT_0421: EX28DRAFT_0421 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 399,899 to 401,293
_0421
EX28DRAFT_0422: EX28DRAFT_0422 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 401,620 to 403,038
_0422
EX28DRAFT_0423: EX28DRAFT_0423 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 403,089 to 403,853
_0423
EX28DRAFT_0424: EX28DRAFT_0424 - Uncharacterized membrane-associated protein, at 403,938 to 404,510
_0424
Position (kb) 401
402
403
404 Strain fitness (log2 ratio) -2
-1
0
1 at 400.621 kb on - strand, within EX28DRAFT_0421 at 400.695 kb on - strand, within EX28DRAFT_0421 at 400.696 kb on + strand, within EX28DRAFT_0421 at 400.697 kb on - strand, within EX28DRAFT_0421 at 400.797 kb on - strand, within EX28DRAFT_0421 at 400.797 kb on - strand, within EX28DRAFT_0421 at 401.045 kb on - strand, within EX28DRAFT_0421 at 401.048 kb on + strand, within EX28DRAFT_0421 at 401.049 kb on - strand, within EX28DRAFT_0421 at 401.111 kb on + strand, within EX28DRAFT_0421 at 401.114 kb on - strand, within EX28DRAFT_0421 at 401.183 kb on + strand at 401.243 kb on + strand at 401.244 kb on - strand at 401.249 kb on + strand at 401.250 kb on - strand at 401.330 kb on - strand at 401.436 kb on - strand at 401.664 kb on + strand at 401.868 kb on + strand, within EX28DRAFT_0422 at 401.869 kb on - strand, within EX28DRAFT_0422 at 401.869 kb on - strand, within EX28DRAFT_0422 at 402.178 kb on + strand, within EX28DRAFT_0422 at 402.179 kb on - strand, within EX28DRAFT_0422 at 402.248 kb on + strand, within EX28DRAFT_0422 at 402.249 kb on - strand, within EX28DRAFT_0422 at 402.249 kb on - strand, within EX28DRAFT_0422 at 402.271 kb on + strand, within EX28DRAFT_0422 at 402.374 kb on + strand, within EX28DRAFT_0422 at 402.420 kb on + strand, within EX28DRAFT_0422 at 402.517 kb on + strand, within EX28DRAFT_0422 at 402.518 kb on - strand, within EX28DRAFT_0422 at 402.565 kb on + strand, within EX28DRAFT_0422 at 402.566 kb on - strand, within EX28DRAFT_0422 at 402.729 kb on + strand, within EX28DRAFT_0422 at 402.729 kb on + strand, within EX28DRAFT_0422 at 402.730 kb on - strand, within EX28DRAFT_0422 at 402.730 kb on - strand, within EX28DRAFT_0422 at 402.749 kb on - strand, within EX28DRAFT_0422 at 402.980 kb on - strand at 403.049 kb on + strand at 403.049 kb on + strand at 403.053 kb on + strand at 403.054 kb on - strand at 403.055 kb on + strand at 403.055 kb on + strand at 403.056 kb on - strand at 403.056 kb on - strand at 403.056 kb on - strand at 403.060 kb on - strand at 403.060 kb on - strand at 403.060 kb on - strand at 403.271 kb on - strand, within EX28DRAFT_0423 at 403.271 kb on - strand, within EX28DRAFT_0423 at 403.799 kb on + strand at 403.852 kb on - strand at 403.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 400,621 - EX28DRAFT_0421 0.52 +0.9 400,695 - EX28DRAFT_0421 0.57 +0.3 400,696 + EX28DRAFT_0421 0.57 +0.8 400,697 - EX28DRAFT_0421 0.57 +0.2 400,797 - EX28DRAFT_0421 0.64 +0.2 400,797 - EX28DRAFT_0421 0.64 -1.1 401,045 - EX28DRAFT_0421 0.82 -0.2 401,048 + EX28DRAFT_0421 0.82 +0.2 401,049 - EX28DRAFT_0421 0.82 +0.8 401,111 + EX28DRAFT_0421 0.87 -0.3 401,114 - EX28DRAFT_0421 0.87 -1.6 401,183 + -0.1 401,243 + +0.4 401,244 - -1.5 401,249 + -1.8 401,250 - -0.4 401,330 - +0.6 401,436 - +0.6 401,664 + -0.0 401,868 + EX28DRAFT_0422 0.17 +0.8 401,869 - EX28DRAFT_0422 0.18 -0.1 401,869 - EX28DRAFT_0422 0.18 +0.3 402,178 + EX28DRAFT_0422 0.39 +0.0 402,179 - EX28DRAFT_0422 0.39 -0.5 402,248 + EX28DRAFT_0422 0.44 +0.1 402,249 - EX28DRAFT_0422 0.44 +0.7 402,249 - EX28DRAFT_0422 0.44 +0.1 402,271 + EX28DRAFT_0422 0.46 -0.2 402,374 + EX28DRAFT_0422 0.53 -0.1 402,420 + EX28DRAFT_0422 0.56 +1.2 402,517 + EX28DRAFT_0422 0.63 -0.3 402,518 - EX28DRAFT_0422 0.63 -0.0 402,565 + EX28DRAFT_0422 0.67 -0.5 402,566 - EX28DRAFT_0422 0.67 +0.3 402,729 + EX28DRAFT_0422 0.78 +0.2 402,729 + EX28DRAFT_0422 0.78 -0.1 402,730 - EX28DRAFT_0422 0.78 +0.1 402,730 - EX28DRAFT_0422 0.78 +0.4 402,749 - EX28DRAFT_0422 0.80 +0.2 402,980 - -0.3 403,049 + +0.2 403,049 + +0.0 403,053 + -0.0 403,054 - +0.7 403,055 + +0.3 403,055 + -0.0 403,056 - +0.8 403,056 - -0.1 403,056 - +0.7 403,060 - +0.3 403,060 - +0.0 403,060 - +1.1 403,271 - EX28DRAFT_0423 0.24 -0.6 403,271 - EX28DRAFT_0423 0.24 +0.4 403,799 + +1.6 403,852 - -1.2 403,911 - -0.4
Or see this region's nucleotide sequence