Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0420

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0419 and EX28DRAFT_0420 are separated by 137 nucleotidesEX28DRAFT_0420 and EX28DRAFT_0421 are separated by 12 nucleotides EX28DRAFT_0419: EX28DRAFT_0419 - transcriptional antiterminator, BglG family, at 397,062 to 397,895 _0419 EX28DRAFT_0420: EX28DRAFT_0420 - PTS system, beta-glucoside-specific IIABC component, at 398,033 to 399,886 _0420 EX28DRAFT_0421: EX28DRAFT_0421 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 399,899 to 401,293 _0421 Position (kb) 398 399 400Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 397.078 kb on + strandat 397.085 kb on + strandat 397.211 kb on - strand, within EX28DRAFT_0419at 397.338 kb on + strand, within EX28DRAFT_0419at 397.338 kb on + strand, within EX28DRAFT_0419at 397.339 kb on - strand, within EX28DRAFT_0419at 397.339 kb on - strand, within EX28DRAFT_0419at 397.339 kb on - strand, within EX28DRAFT_0419at 397.340 kb on + strand, within EX28DRAFT_0419at 397.341 kb on - strand, within EX28DRAFT_0419at 397.362 kb on + strand, within EX28DRAFT_0419at 397.362 kb on + strand, within EX28DRAFT_0419at 397.425 kb on - strand, within EX28DRAFT_0419at 397.620 kb on + strand, within EX28DRAFT_0419at 397.621 kb on - strand, within EX28DRAFT_0419at 397.638 kb on + strand, within EX28DRAFT_0419at 397.638 kb on + strand, within EX28DRAFT_0419at 397.659 kb on + strand, within EX28DRAFT_0419at 397.764 kb on + strand, within EX28DRAFT_0419at 397.765 kb on - strand, within EX28DRAFT_0419at 397.847 kb on + strandat 397.847 kb on + strandat 397.847 kb on + strandat 397.848 kb on - strandat 397.848 kb on - strandat 397.865 kb on + strandat 397.866 kb on - strandat 397.984 kb on + strandat 397.985 kb on - strandat 397.985 kb on - strandat 397.987 kb on - strandat 398.104 kb on - strandat 398.104 kb on - strandat 398.459 kb on + strand, within EX28DRAFT_0420at 398.460 kb on - strand, within EX28DRAFT_0420at 398.555 kb on - strand, within EX28DRAFT_0420at 398.555 kb on - strand, within EX28DRAFT_0420at 398.557 kb on + strand, within EX28DRAFT_0420at 398.671 kb on + strand, within EX28DRAFT_0420at 398.676 kb on - strand, within EX28DRAFT_0420at 398.878 kb on + strand, within EX28DRAFT_0420at 398.882 kb on + strand, within EX28DRAFT_0420at 398.882 kb on + strand, within EX28DRAFT_0420at 398.883 kb on - strand, within EX28DRAFT_0420at 398.980 kb on + strand, within EX28DRAFT_0420at 398.981 kb on - strand, within EX28DRAFT_0420at 399.130 kb on - strand, within EX28DRAFT_0420at 399.163 kb on - strand, within EX28DRAFT_0420at 399.163 kb on - strand, within EX28DRAFT_0420at 399.187 kb on + strand, within EX28DRAFT_0420at 399.187 kb on + strand, within EX28DRAFT_0420at 399.252 kb on - strand, within EX28DRAFT_0420at 399.444 kb on + strand, within EX28DRAFT_0420at 399.533 kb on - strand, within EX28DRAFT_0420at 399.793 kb on + strandat 399.794 kb on - strandat 400.082 kb on + strand, within EX28DRAFT_0421at 400.129 kb on + strand, within EX28DRAFT_0421at 400.130 kb on - strand, within EX28DRAFT_0421at 400.215 kb on - strand, within EX28DRAFT_0421at 400.307 kb on + strand, within EX28DRAFT_0421at 400.377 kb on - strand, within EX28DRAFT_0421at 400.378 kb on + strand, within EX28DRAFT_0421at 400.379 kb on - strand, within EX28DRAFT_0421at 400.420 kb on + strand, within EX28DRAFT_0421at 400.420 kb on + strand, within EX28DRAFT_0421at 400.420 kb on + strand, within EX28DRAFT_0421at 400.420 kb on + strand, within EX28DRAFT_0421at 400.420 kb on + strand, within EX28DRAFT_0421at 400.421 kb on - strand, within EX28DRAFT_0421at 400.421 kb on - strand, within EX28DRAFT_0421at 400.471 kb on + strand, within EX28DRAFT_0421at 400.484 kb on + strand, within EX28DRAFT_0421at 400.570 kb on + strand, within EX28DRAFT_0421at 400.570 kb on + strand, within EX28DRAFT_0421at 400.571 kb on - strand, within EX28DRAFT_0421at 400.571 kb on - strand, within EX28DRAFT_0421at 400.593 kb on - strand, within EX28DRAFT_0421at 400.621 kb on - strand, within EX28DRAFT_0421at 400.695 kb on - strand, within EX28DRAFT_0421at 400.696 kb on + strand, within EX28DRAFT_0421at 400.697 kb on - strand, within EX28DRAFT_0421at 400.797 kb on - strand, within EX28DRAFT_0421at 400.797 kb on - strand, within EX28DRAFT_0421

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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397,078 + -0.4
397,085 + -0.2
397,211 - EX28DRAFT_0419 0.18 -0.6
397,338 + EX28DRAFT_0419 0.33 +0.3
397,338 + EX28DRAFT_0419 0.33 +0.1
397,339 - EX28DRAFT_0419 0.33 +0.0
397,339 - EX28DRAFT_0419 0.33 +0.1
397,339 - EX28DRAFT_0419 0.33 -0.2
397,340 + EX28DRAFT_0419 0.33 +0.9
397,341 - EX28DRAFT_0419 0.33 -0.3
397,362 + EX28DRAFT_0419 0.36 +0.9
397,362 + EX28DRAFT_0419 0.36 -0.6
397,425 - EX28DRAFT_0419 0.44 +0.2
397,620 + EX28DRAFT_0419 0.67 +0.1
397,621 - EX28DRAFT_0419 0.67 +0.5
397,638 + EX28DRAFT_0419 0.69 +0.6
397,638 + EX28DRAFT_0419 0.69 -0.1
397,659 + EX28DRAFT_0419 0.72 +0.2
397,764 + EX28DRAFT_0419 0.84 +0.3
397,765 - EX28DRAFT_0419 0.84 +0.3
397,847 + +0.4
397,847 + -0.3
397,847 + +0.3
397,848 - +0.6
397,848 - -3.9
397,865 + +0.7
397,866 - -0.4
397,984 + +1.2
397,985 - +1.7
397,985 - +0.4
397,987 - +0.1
398,104 - -1.3
398,104 - -0.5
398,459 + EX28DRAFT_0420 0.23 -0.3
398,460 - EX28DRAFT_0420 0.23 +0.4
398,555 - EX28DRAFT_0420 0.28 -0.2
398,555 - EX28DRAFT_0420 0.28 -0.0
398,557 + EX28DRAFT_0420 0.28 -0.5
398,671 + EX28DRAFT_0420 0.34 +0.3
398,676 - EX28DRAFT_0420 0.35 +0.2
398,878 + EX28DRAFT_0420 0.46 -0.7
398,882 + EX28DRAFT_0420 0.46 +0.9
398,882 + EX28DRAFT_0420 0.46 -0.2
398,883 - EX28DRAFT_0420 0.46 +0.5
398,980 + EX28DRAFT_0420 0.51 -1.2
398,981 - EX28DRAFT_0420 0.51 +0.0
399,130 - EX28DRAFT_0420 0.59 +0.3
399,163 - EX28DRAFT_0420 0.61 +1.3
399,163 - EX28DRAFT_0420 0.61 +0.1
399,187 + EX28DRAFT_0420 0.62 +0.4
399,187 + EX28DRAFT_0420 0.62 +0.8
399,252 - EX28DRAFT_0420 0.66 +0.9
399,444 + EX28DRAFT_0420 0.76 +1.2
399,533 - EX28DRAFT_0420 0.81 -0.1
399,793 + +0.3
399,794 - -0.5
400,082 + EX28DRAFT_0421 0.13 +0.4
400,129 + EX28DRAFT_0421 0.16 +0.2
400,130 - EX28DRAFT_0421 0.17 +0.3
400,215 - EX28DRAFT_0421 0.23 -0.2
400,307 + EX28DRAFT_0421 0.29 +0.6
400,377 - EX28DRAFT_0421 0.34 +0.1
400,378 + EX28DRAFT_0421 0.34 -0.3
400,379 - EX28DRAFT_0421 0.34 +0.4
400,420 + EX28DRAFT_0421 0.37 +0.5
400,420 + EX28DRAFT_0421 0.37 +0.3
400,420 + EX28DRAFT_0421 0.37 +0.1
400,420 + EX28DRAFT_0421 0.37 +0.2
400,420 + EX28DRAFT_0421 0.37 +0.5
400,421 - EX28DRAFT_0421 0.37 +0.2
400,421 - EX28DRAFT_0421 0.37 +0.3
400,471 + EX28DRAFT_0421 0.41 +0.6
400,484 + EX28DRAFT_0421 0.42 -0.1
400,570 + EX28DRAFT_0421 0.48 +0.1
400,570 + EX28DRAFT_0421 0.48 +0.2
400,571 - EX28DRAFT_0421 0.48 +0.3
400,571 - EX28DRAFT_0421 0.48 -0.2
400,593 - EX28DRAFT_0421 0.50 +0.3
400,621 - EX28DRAFT_0421 0.52 +0.9
400,695 - EX28DRAFT_0421 0.57 +0.3
400,696 + EX28DRAFT_0421 0.57 +0.8
400,697 - EX28DRAFT_0421 0.57 +0.2
400,797 - EX28DRAFT_0421 0.64 +0.2
400,797 - EX28DRAFT_0421 0.64 -1.1

Or see this region's nucleotide sequence