Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0384

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0383 and EX28DRAFT_0384 are separated by 9 nucleotidesEX28DRAFT_0384 and EX28DRAFT_0385 are separated by 74 nucleotides EX28DRAFT_0383: EX28DRAFT_0383 - ABC-type uncharacterized transport system, permease component, at 355,112 to 356,206 _0383 EX28DRAFT_0384: EX28DRAFT_0384 - ABC-type oligopeptide transport system, periplasmic component, at 356,216 to 358,021 _0384 EX28DRAFT_0385: EX28DRAFT_0385 - FOG: EAL domain, at 358,096 to 359,652 _0385 Position (kb) 356 357 358 359Strain fitness (log2 ratio) -2 -1 0 1 2at 355.244 kb on - strand, within EX28DRAFT_0383at 355.244 kb on - strand, within EX28DRAFT_0383at 355.251 kb on + strand, within EX28DRAFT_0383at 355.432 kb on - strand, within EX28DRAFT_0383at 355.536 kb on + strand, within EX28DRAFT_0383at 355.725 kb on + strand, within EX28DRAFT_0383at 355.726 kb on - strand, within EX28DRAFT_0383at 355.754 kb on - strand, within EX28DRAFT_0383at 355.764 kb on + strand, within EX28DRAFT_0383at 355.764 kb on + strand, within EX28DRAFT_0383at 355.878 kb on + strand, within EX28DRAFT_0383at 356.197 kb on - strandat 356.259 kb on + strandat 356.348 kb on - strandat 356.349 kb on + strandat 356.349 kb on + strandat 356.350 kb on - strandat 356.368 kb on - strandat 356.368 kb on - strandat 356.368 kb on - strandat 356.368 kb on - strandat 356.370 kb on + strandat 356.371 kb on - strandat 356.496 kb on + strand, within EX28DRAFT_0384at 356.497 kb on - strand, within EX28DRAFT_0384at 356.497 kb on - strand, within EX28DRAFT_0384at 356.512 kb on - strand, within EX28DRAFT_0384at 356.950 kb on - strand, within EX28DRAFT_0384at 357.144 kb on + strand, within EX28DRAFT_0384at 357.144 kb on + strand, within EX28DRAFT_0384at 357.145 kb on - strand, within EX28DRAFT_0384at 357.209 kb on + strand, within EX28DRAFT_0384at 357.262 kb on - strand, within EX28DRAFT_0384at 357.262 kb on - strand, within EX28DRAFT_0384at 357.264 kb on + strand, within EX28DRAFT_0384at 357.345 kb on + strand, within EX28DRAFT_0384at 357.354 kb on + strand, within EX28DRAFT_0384at 357.355 kb on - strand, within EX28DRAFT_0384at 357.430 kb on + strand, within EX28DRAFT_0384at 357.431 kb on - strand, within EX28DRAFT_0384at 357.484 kb on + strand, within EX28DRAFT_0384at 357.484 kb on + strand, within EX28DRAFT_0384at 357.729 kb on + strand, within EX28DRAFT_0384at 357.915 kb on + strandat 358.016 kb on - strandat 358.016 kb on - strandat 358.070 kb on + strandat 358.071 kb on - strandat 358.071 kb on - strandat 358.071 kb on - strandat 358.071 kb on - strandat 358.251 kb on + strandat 358.324 kb on - strand, within EX28DRAFT_0385at 358.349 kb on + strand, within EX28DRAFT_0385at 358.349 kb on + strand, within EX28DRAFT_0385at 358.489 kb on - strand, within EX28DRAFT_0385at 358.545 kb on + strand, within EX28DRAFT_0385at 358.616 kb on - strand, within EX28DRAFT_0385at 358.821 kb on - strand, within EX28DRAFT_0385at 358.847 kb on - strand, within EX28DRAFT_0385at 358.876 kb on - strand, within EX28DRAFT_0385at 358.885 kb on - strand, within EX28DRAFT_0385at 358.885 kb on - strand, within EX28DRAFT_0385at 358.886 kb on + strand, within EX28DRAFT_0385at 358.887 kb on - strand, within EX28DRAFT_0385at 358.887 kb on - strand, within EX28DRAFT_0385at 358.889 kb on + strand, within EX28DRAFT_0385at 358.889 kb on + strand, within EX28DRAFT_0385at 358.889 kb on + strand, within EX28DRAFT_0385at 358.890 kb on - strand, within EX28DRAFT_0385at 358.890 kb on - strand, within EX28DRAFT_0385at 358.890 kb on - strand, within EX28DRAFT_0385at 358.982 kb on - strand, within EX28DRAFT_0385

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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355,244 - EX28DRAFT_0383 0.12 -1.3
355,244 - EX28DRAFT_0383 0.12 +0.8
355,251 + EX28DRAFT_0383 0.13 -0.4
355,432 - EX28DRAFT_0383 0.29 -0.1
355,536 + EX28DRAFT_0383 0.39 -0.5
355,725 + EX28DRAFT_0383 0.56 +0.6
355,726 - EX28DRAFT_0383 0.56 -1.0
355,754 - EX28DRAFT_0383 0.59 -0.6
355,764 + EX28DRAFT_0383 0.60 -0.1
355,764 + EX28DRAFT_0383 0.60 -0.1
355,878 + EX28DRAFT_0383 0.70 -2.0
356,197 - +0.0
356,259 + +0.0
356,348 - +0.0
356,349 + -0.8
356,349 + +0.1
356,350 - -0.2
356,368 - +0.1
356,368 - +0.0
356,368 - -1.6
356,368 - -0.8
356,370 + +1.4
356,371 - +0.4
356,496 + EX28DRAFT_0384 0.16 +2.6
356,497 - EX28DRAFT_0384 0.16 -0.6
356,497 - EX28DRAFT_0384 0.16 +0.3
356,512 - EX28DRAFT_0384 0.16 +0.0
356,950 - EX28DRAFT_0384 0.41 -0.8
357,144 + EX28DRAFT_0384 0.51 -0.2
357,144 + EX28DRAFT_0384 0.51 +0.4
357,145 - EX28DRAFT_0384 0.51 -0.4
357,209 + EX28DRAFT_0384 0.55 +2.2
357,262 - EX28DRAFT_0384 0.58 -1.4
357,262 - EX28DRAFT_0384 0.58 +0.0
357,264 + EX28DRAFT_0384 0.58 +0.5
357,345 + EX28DRAFT_0384 0.63 +2.3
357,354 + EX28DRAFT_0384 0.63 -0.8
357,355 - EX28DRAFT_0384 0.63 -0.2
357,430 + EX28DRAFT_0384 0.67 +1.1
357,431 - EX28DRAFT_0384 0.67 -0.9
357,484 + EX28DRAFT_0384 0.70 +0.6
357,484 + EX28DRAFT_0384 0.70 -0.5
357,729 + EX28DRAFT_0384 0.84 +0.2
357,915 + -0.1
358,016 - +0.0
358,016 - +0.6
358,070 + -0.7
358,071 - -0.5
358,071 - +0.4
358,071 - +0.4
358,071 - +1.2
358,251 + -0.5
358,324 - EX28DRAFT_0385 0.15 +0.0
358,349 + EX28DRAFT_0385 0.16 +0.2
358,349 + EX28DRAFT_0385 0.16 +0.0
358,489 - EX28DRAFT_0385 0.25 -0.3
358,545 + EX28DRAFT_0385 0.29 -1.4
358,616 - EX28DRAFT_0385 0.33 +0.1
358,821 - EX28DRAFT_0385 0.47 -0.7
358,847 - EX28DRAFT_0385 0.48 +0.2
358,876 - EX28DRAFT_0385 0.50 -0.3
358,885 - EX28DRAFT_0385 0.51 +0.7
358,885 - EX28DRAFT_0385 0.51 +0.1
358,886 + EX28DRAFT_0385 0.51 +1.1
358,887 - EX28DRAFT_0385 0.51 +1.5
358,887 - EX28DRAFT_0385 0.51 -1.3
358,889 + EX28DRAFT_0385 0.51 -0.3
358,889 + EX28DRAFT_0385 0.51 -1.0
358,889 + EX28DRAFT_0385 0.51 -0.1
358,890 - EX28DRAFT_0385 0.51 -0.3
358,890 - EX28DRAFT_0385 0.51 +0.2
358,890 - EX28DRAFT_0385 0.51 +1.3
358,982 - EX28DRAFT_0385 0.57 +0.1

Or see this region's nucleotide sequence