Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0266

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0264 and EX28DRAFT_0265 are separated by 49 nucleotidesEX28DRAFT_0265 and EX28DRAFT_0266 are separated by 75 nucleotidesEX28DRAFT_0266 and EX28DRAFT_0267 are separated by 315 nucleotides EX28DRAFT_0264: EX28DRAFT_0264 - ImpA-related N-terminal/ImpA domain protein, at 225,469 to 226,800 _0264 EX28DRAFT_0265: EX28DRAFT_0265 - tRNA, at 226,850 to 226,921 _0265 EX28DRAFT_0266: EX28DRAFT_0266 - Formate/nitrite family of transporters, at 226,997 to 227,926 _0266 EX28DRAFT_0267: EX28DRAFT_0267 - Surface lipoprotein, at 228,242 to 228,994 _0267 Position (kb) 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1at 226.075 kb on + strand, within EX28DRAFT_0264at 226.075 kb on + strand, within EX28DRAFT_0264at 226.075 kb on + strand, within EX28DRAFT_0264at 226.075 kb on + strand, within EX28DRAFT_0264at 226.076 kb on - strand, within EX28DRAFT_0264at 226.076 kb on - strand, within EX28DRAFT_0264at 226.076 kb on - strand, within EX28DRAFT_0264at 226.076 kb on - strand, within EX28DRAFT_0264at 226.189 kb on - strand, within EX28DRAFT_0264at 226.317 kb on + strand, within EX28DRAFT_0264at 226.399 kb on + strand, within EX28DRAFT_0264at 226.415 kb on + strand, within EX28DRAFT_0264at 226.434 kb on - strand, within EX28DRAFT_0264at 226.523 kb on - strand, within EX28DRAFT_0264at 226.611 kb on + strand, within EX28DRAFT_0264at 226.611 kb on + strand, within EX28DRAFT_0264at 226.634 kb on + strand, within EX28DRAFT_0264at 226.635 kb on - strand, within EX28DRAFT_0264at 226.747 kb on - strandat 226.747 kb on - strandat 226.765 kb on + strandat 226.775 kb on + strandat 226.899 kb on + strand, within EX28DRAFT_0265at 227.021 kb on - strandat 227.042 kb on - strandat 227.107 kb on + strand, within EX28DRAFT_0266at 227.183 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.228 kb on - strand, within EX28DRAFT_0266at 227.267 kb on + strand, within EX28DRAFT_0266at 227.267 kb on + strand, within EX28DRAFT_0266at 227.268 kb on - strand, within EX28DRAFT_0266at 227.382 kb on - strand, within EX28DRAFT_0266at 227.440 kb on - strand, within EX28DRAFT_0266at 227.440 kb on - strand, within EX28DRAFT_0266at 227.440 kb on - strand, within EX28DRAFT_0266at 227.476 kb on + strand, within EX28DRAFT_0266at 227.608 kb on + strand, within EX28DRAFT_0266at 227.609 kb on - strand, within EX28DRAFT_0266at 227.609 kb on - strand, within EX28DRAFT_0266at 227.657 kb on + strand, within EX28DRAFT_0266at 227.658 kb on - strand, within EX28DRAFT_0266at 227.786 kb on + strand, within EX28DRAFT_0266at 227.786 kb on + strand, within EX28DRAFT_0266at 227.787 kb on - strand, within EX28DRAFT_0266at 227.787 kb on - strand, within EX28DRAFT_0266at 227.788 kb on + strand, within EX28DRAFT_0266at 227.788 kb on + strand, within EX28DRAFT_0266at 227.789 kb on - strand, within EX28DRAFT_0266at 227.915 kb on + strandat 227.926 kb on + strandat 227.926 kb on + strandat 227.926 kb on + strandat 227.927 kb on - strandat 227.997 kb on + strandat 228.026 kb on + strandat 228.027 kb on - strandat 228.131 kb on + strandat 228.132 kb on - strandat 228.132 kb on - strandat 228.153 kb on + strandat 228.222 kb on + strandat 228.237 kb on + strandat 228.237 kb on + strandat 228.238 kb on - strandat 228.241 kb on + strandat 228.241 kb on + strandat 228.242 kb on - strandat 228.356 kb on + strand, within EX28DRAFT_0267at 228.356 kb on + strand, within EX28DRAFT_0267at 228.356 kb on + strand, within EX28DRAFT_0267at 228.368 kb on + strand, within EX28DRAFT_0267at 228.386 kb on + strand, within EX28DRAFT_0267at 228.387 kb on - strand, within EX28DRAFT_0267at 228.387 kb on - strand, within EX28DRAFT_0267at 228.451 kb on - strand, within EX28DRAFT_0267at 228.455 kb on - strand, within EX28DRAFT_0267at 228.498 kb on - strand, within EX28DRAFT_0267at 228.580 kb on + strand, within EX28DRAFT_0267at 228.688 kb on - strand, within EX28DRAFT_0267at 228.696 kb on - strand, within EX28DRAFT_0267at 228.700 kb on + strand, within EX28DRAFT_0267at 228.871 kb on + strand, within EX28DRAFT_0267at 228.871 kb on + strand, within EX28DRAFT_0267at 228.871 kb on + strand, within EX28DRAFT_0267at 228.876 kb on + strand, within EX28DRAFT_0267at 228.876 kb on + strand, within EX28DRAFT_0267at 228.876 kb on + strand, within EX28DRAFT_0267at 228.877 kb on - strand, within EX28DRAFT_0267at 228.887 kb on + strand, within EX28DRAFT_0267

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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226,075 + EX28DRAFT_0264 0.45 -0.3
226,075 + EX28DRAFT_0264 0.45 +1.4
226,075 + EX28DRAFT_0264 0.45 +0.0
226,075 + EX28DRAFT_0264 0.45 +1.1
226,076 - EX28DRAFT_0264 0.46 -0.1
226,076 - EX28DRAFT_0264 0.46 +0.6
226,076 - EX28DRAFT_0264 0.46 -0.2
226,076 - EX28DRAFT_0264 0.46 +0.1
226,189 - EX28DRAFT_0264 0.54 +0.2
226,317 + EX28DRAFT_0264 0.64 -0.5
226,399 + EX28DRAFT_0264 0.70 +0.1
226,415 + EX28DRAFT_0264 0.71 -1.4
226,434 - EX28DRAFT_0264 0.72 +0.3
226,523 - EX28DRAFT_0264 0.79 -1.1
226,611 + EX28DRAFT_0264 0.86 +0.3
226,611 + EX28DRAFT_0264 0.86 +0.3
226,634 + EX28DRAFT_0264 0.87 +0.2
226,635 - EX28DRAFT_0264 0.88 +0.3
226,747 - -0.7
226,747 - +0.8
226,765 + -0.1
226,775 + -1.1
226,899 + EX28DRAFT_0265 0.68 -1.3
227,021 - -0.6
227,042 - +0.1
227,107 + EX28DRAFT_0266 0.12 +1.2
227,183 - EX28DRAFT_0266 0.20 +0.3
227,228 - EX28DRAFT_0266 0.25 +0.5
227,228 - EX28DRAFT_0266 0.25 -0.5
227,228 - EX28DRAFT_0266 0.25 +0.4
227,228 - EX28DRAFT_0266 0.25 -0.7
227,228 - EX28DRAFT_0266 0.25 +0.4
227,267 + EX28DRAFT_0266 0.29 +0.5
227,267 + EX28DRAFT_0266 0.29 -0.8
227,268 - EX28DRAFT_0266 0.29 +0.5
227,382 - EX28DRAFT_0266 0.41 +0.4
227,440 - EX28DRAFT_0266 0.48 +0.6
227,440 - EX28DRAFT_0266 0.48 +0.7
227,440 - EX28DRAFT_0266 0.48 +0.1
227,476 + EX28DRAFT_0266 0.52 -0.1
227,608 + EX28DRAFT_0266 0.66 -0.6
227,609 - EX28DRAFT_0266 0.66 +0.4
227,609 - EX28DRAFT_0266 0.66 -0.3
227,657 + EX28DRAFT_0266 0.71 -0.6
227,658 - EX28DRAFT_0266 0.71 +0.5
227,786 + EX28DRAFT_0266 0.85 +0.1
227,786 + EX28DRAFT_0266 0.85 +0.4
227,787 - EX28DRAFT_0266 0.85 -0.2
227,787 - EX28DRAFT_0266 0.85 +1.7
227,788 + EX28DRAFT_0266 0.85 +0.1
227,788 + EX28DRAFT_0266 0.85 +0.6
227,789 - EX28DRAFT_0266 0.85 -0.4
227,915 + +0.1
227,926 + -0.4
227,926 + -0.4
227,926 + +0.8
227,927 - +1.3
227,997 + +1.2
228,026 + -0.5
228,027 - -1.5
228,131 + -0.2
228,132 - +0.9
228,132 - -0.8
228,153 + +0.1
228,222 + -0.8
228,237 + +0.1
228,237 + -0.3
228,238 - -0.2
228,241 + +0.9
228,241 + +0.3
228,242 - -3.2
228,356 + EX28DRAFT_0267 0.15 +0.0
228,356 + EX28DRAFT_0267 0.15 -0.6
228,356 + EX28DRAFT_0267 0.15 +0.1
228,368 + EX28DRAFT_0267 0.17 -0.3
228,386 + EX28DRAFT_0267 0.19 -0.0
228,387 - EX28DRAFT_0267 0.19 -1.2
228,387 - EX28DRAFT_0267 0.19 -0.3
228,451 - EX28DRAFT_0267 0.28 +1.3
228,455 - EX28DRAFT_0267 0.28 -0.5
228,498 - EX28DRAFT_0267 0.34 -0.1
228,580 + EX28DRAFT_0267 0.45 -0.4
228,688 - EX28DRAFT_0267 0.59 +0.1
228,696 - EX28DRAFT_0267 0.60 -0.5
228,700 + EX28DRAFT_0267 0.61 +0.3
228,871 + EX28DRAFT_0267 0.84 -0.9
228,871 + EX28DRAFT_0267 0.84 -0.4
228,871 + EX28DRAFT_0267 0.84 +0.1
228,876 + EX28DRAFT_0267 0.84 +0.0
228,876 + EX28DRAFT_0267 0.84 +0.2
228,876 + EX28DRAFT_0267 0.84 -0.3
228,877 - EX28DRAFT_0267 0.84 -1.0
228,887 + EX28DRAFT_0267 0.86 -0.5

Or see this region's nucleotide sequence