Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0129

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0128 and EX28DRAFT_0129 overlap by 4 nucleotidesEX28DRAFT_0129 and EX28DRAFT_0130 are separated by 19 nucleotides EX28DRAFT_0128: EX28DRAFT_0128 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3), at 72,110 to 73,228 _0128 EX28DRAFT_0129: EX28DRAFT_0129 - RNA, at 73,225 to 73,289 _0129 EX28DRAFT_0130: EX28DRAFT_0130 - histidyl-tRNA synthetase (EC 6.1.1.21), at 73,309 to 74,583 _0130 Position (kb) 73 74Strain fitness (log2 ratio) -1 0 1at 73.257 kb on + strand, within EX28DRAFT_0129at 73.289 kb on + strandat 73.293 kb on + strandat 73.293 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
73,257 + EX28DRAFT_0129 0.49 +0.7
73,289 + -0.1
73,293 + -0.1
73,293 + +0.6

Or see this region's nucleotide sequence