Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0064 and EX28DRAFT_0065 are separated by 69 nucleotides EX28DRAFT_0065 and EX28DRAFT_0066 are separated by 204 nucleotides EX28DRAFT_0066 and EX28DRAFT_0067 are separated by 40 nucleotides
EX28DRAFT_0064: EX28DRAFT_0064 - Uncharacterized conserved protein, at 6,347 to 7,045
_0064
EX28DRAFT_0065: EX28DRAFT_0065 - thioredoxin, at 7,115 to 7,534
_0065
EX28DRAFT_0066: EX28DRAFT_0066 - rRNA methylases, at 7,739 to 8,869
_0066
EX28DRAFT_0067: EX28DRAFT_0067 - Uracil-DNA glycosylase (EC 3.2.2.-), at 8,910 to 9,599
_0067
Position (kb)
7
8
9 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6.965 kb on - strand, within EX28DRAFT_0064 at 7.439 kb on + strand, within EX28DRAFT_0065 at 7.502 kb on - strand at 7.523 kb on + strand at 7.523 kb on + strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.529 kb on - strand at 7.534 kb on + strand at 7.535 kb on - strand at 7.539 kb on - strand at 7.590 kb on + strand at 7.590 kb on + strand at 7.590 kb on + strand at 7.591 kb on - strand at 7.595 kb on + strand at 7.596 kb on - strand at 7.599 kb on + strand at 7.599 kb on + strand at 7.600 kb on - strand at 7.600 kb on - strand at 7.627 kb on + strand at 7.637 kb on - strand at 7.652 kb on + strand at 7.653 kb on - strand at 7.653 kb on - strand at 7.676 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.785 kb on - strand at 7.785 kb on - strand at 7.810 kb on + strand at 7.907 kb on - strand, within EX28DRAFT_0066 at 8.210 kb on - strand, within EX28DRAFT_0066 at 8.321 kb on - strand, within EX28DRAFT_0066 at 8.555 kb on - strand, within EX28DRAFT_0066 at 8.580 kb on + strand, within EX28DRAFT_0066 at 8.629 kb on + strand, within EX28DRAFT_0066 at 8.715 kb on + strand, within EX28DRAFT_0066 at 8.716 kb on - strand, within EX28DRAFT_0066 at 8.867 kb on + strand at 8.867 kb on + strand at 8.868 kb on - strand at 8.876 kb on + strand at 8.912 kb on - strand at 8.928 kb on + strand at 8.931 kb on + strand at 8.931 kb on + strand at 9.120 kb on + strand, within EX28DRAFT_0067 at 9.146 kb on + strand, within EX28DRAFT_0067 at 9.230 kb on + strand, within EX28DRAFT_0067 at 9.321 kb on - strand, within EX28DRAFT_0067 at 9.322 kb on + strand, within EX28DRAFT_0067 at 9.322 kb on + strand, within EX28DRAFT_0067 at 9.322 kb on + strand, within EX28DRAFT_0067 at 9.322 kb on + strand, within EX28DRAFT_0067 at 9.323 kb on - strand, within EX28DRAFT_0067 at 9.323 kb on - strand, within EX28DRAFT_0067 at 9.323 kb on - strand, within EX28DRAFT_0067 at 9.323 kb on - strand, within EX28DRAFT_0067 at 9.323 kb on - strand, within EX28DRAFT_0067 at 9.539 kb on + strand at 9.540 kb on - strand at 9.544 kb on + strand at 9.545 kb on - strand at 9.631 kb on - strand at 9.635 kb on + strand at 9.830 kb on + strand at 9.830 kb on + strand at 9.831 kb on - strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.833 kb on - strand at 9.833 kb on - strand at 9.833 kb on - strand at 9.834 kb on + strand at 9.834 kb on + strand at 9.834 kb on + strand at 9.835 kb on - strand at 9.836 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 6,965 - EX28DRAFT_0064 0.88 -0.1 7,439 + EX28DRAFT_0065 0.77 -0.2 7,502 - +0.0 7,523 + +0.3 7,523 + -0.5 7,524 - -0.1 7,524 - -0.2 7,524 - -0.6 7,529 - -0.7 7,534 + +1.4 7,535 - -0.5 7,539 - -0.5 7,590 + +0.0 7,590 + -0.2 7,590 + -0.4 7,591 - +0.5 7,595 + +0.3 7,596 - -0.4 7,599 + +0.2 7,599 + +0.5 7,600 - -0.3 7,600 - -0.1 7,627 + +1.1 7,637 - +1.0 7,652 + +0.0 7,653 - +0.5 7,653 - -0.3 7,676 + +0.2 7,784 + +0.2 7,784 + +0.7 7,784 + +1.4 7,784 + +0.8 7,784 + -0.3 7,784 + +1.2 7,784 + +0.5 7,784 + +0.1 7,785 - +0.7 7,785 - +0.3 7,810 + +0.5 7,907 - EX28DRAFT_0066 0.15 +0.7 8,210 - EX28DRAFT_0066 0.42 +1.2 8,321 - EX28DRAFT_0066 0.51 +1.0 8,555 - EX28DRAFT_0066 0.72 -1.1 8,580 + EX28DRAFT_0066 0.74 +0.0 8,629 + EX28DRAFT_0066 0.79 +0.2 8,715 + EX28DRAFT_0066 0.86 +0.1 8,716 - EX28DRAFT_0066 0.86 -0.2 8,867 + +0.2 8,867 + +1.0 8,868 - -0.1 8,876 + +0.4 8,912 - -2.1 8,928 + +0.5 8,931 + +0.2 8,931 + -1.0 9,120 + EX28DRAFT_0067 0.30 -1.0 9,146 + EX28DRAFT_0067 0.34 +0.0 9,230 + EX28DRAFT_0067 0.46 +0.3 9,321 - EX28DRAFT_0067 0.60 -0.8 9,322 + EX28DRAFT_0067 0.60 +0.3 9,322 + EX28DRAFT_0067 0.60 +0.7 9,322 + EX28DRAFT_0067 0.60 -0.7 9,322 + EX28DRAFT_0067 0.60 -0.6 9,323 - EX28DRAFT_0067 0.60 +0.4 9,323 - EX28DRAFT_0067 0.60 -0.1 9,323 - EX28DRAFT_0067 0.60 +1.3 9,323 - EX28DRAFT_0067 0.60 +0.1 9,323 - EX28DRAFT_0067 0.60 -0.0 9,539 + +0.0 9,540 - +0.2 9,544 + +0.9 9,545 - +0.7 9,631 - +0.7 9,635 + -2.8 9,830 + +0.4 9,830 + +0.1 9,831 - -0.2 9,832 + -1.8 9,832 + +0.3 9,832 + +0.2 9,832 + +0.1 9,832 + -0.6 9,832 + -0.7 9,832 + -0.3 9,832 + +0.2 9,833 - +0.8 9,833 - -0.1 9,833 - +0.9 9,834 + +0.1 9,834 + -0.4 9,834 + +0.2 9,835 - +0.2 9,836 + +2.9
Or see this region's nucleotide sequence