Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17485

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17480 and CA264_17485 are separated by 118 nucleotidesCA264_17485 and CA264_17490 are separated by 158 nucleotidesCA264_17490 and CA264_17495 are separated by 156 nucleotides CA264_17480: CA264_17480 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 4,073,589 to 4,074,635 _17480 CA264_17485: CA264_17485 - cytochrome C biosynthesis protein, at 4,074,754 to 4,075,473 _17485 CA264_17490: CA264_17490 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,075,632 to 4,076,108 _17490 CA264_17495: CA264_17495 - hypothetical protein, at 4,076,265 to 4,076,855 _17495 Position (kb) 4074 4075 4076Strain fitness (log2 ratio) -1 0 1at 4074.061 kb on + strand, within CA264_17480at 4074.694 kb on + strandat 4074.707 kb on + strandat 4074.707 kb on + strandat 4074.724 kb on + strandat 4074.743 kb on + strandat 4074.743 kb on + strandat 4074.749 kb on + strandat 4075.390 kb on + strand, within CA264_17485at 4075.427 kb on - strandat 4075.427 kb on - strandat 4075.429 kb on - strandat 4075.472 kb on - strandat 4075.493 kb on + strandat 4075.494 kb on - strandat 4075.494 kb on - strandat 4075.578 kb on - strandat 4075.646 kb on - strandat 4076.136 kb on + strandat 4076.140 kb on + strandat 4076.184 kb on - strandat 4076.364 kb on - strand, within CA264_17495at 4076.369 kb on + strand, within CA264_17495

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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4,074,061 + CA264_17480 0.45 +1.4
4,074,694 + +0.0
4,074,707 + -0.1
4,074,707 + +0.0
4,074,724 + -0.5
4,074,743 + +0.3
4,074,743 + +0.0
4,074,749 + -0.3
4,075,390 + CA264_17485 0.88 -0.4
4,075,427 - -1.0
4,075,427 - +0.5
4,075,429 - -0.8
4,075,472 - -0.5
4,075,493 + +0.2
4,075,494 - -1.0
4,075,494 - +0.1
4,075,578 - -0.1
4,075,646 - +0.9
4,076,136 + -0.1
4,076,140 + -1.2
4,076,184 - -0.9
4,076,364 - CA264_17495 0.17 -0.2
4,076,369 + CA264_17495 0.18 -0.2

Or see this region's nucleotide sequence