Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13900

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13895 and CA264_13900 are separated by 139 nucleotidesCA264_13900 and CA264_13905 overlap by 4 nucleotides CA264_13895: CA264_13895 - glutamyl-tRNA reductase, at 3,242,788 to 3,244,050 _13895 CA264_13900: CA264_13900 - transcriptional regulator, at 3,244,190 to 3,245,251 _13900 CA264_13905: CA264_13905 - hybrid sensor histidine kinase/response regulator, at 3,245,248 to 3,246,480 _13905 Position (kb) 3244 3245 3246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3243.249 kb on + strand, within CA264_13895at 3243.250 kb on - strand, within CA264_13895at 3243.350 kb on + strand, within CA264_13895at 3243.351 kb on - strand, within CA264_13895at 3243.518 kb on - strand, within CA264_13895at 3243.518 kb on - strand, within CA264_13895at 3243.545 kb on + strand, within CA264_13895at 3243.741 kb on - strand, within CA264_13895at 3243.783 kb on + strand, within CA264_13895at 3243.788 kb on + strand, within CA264_13895at 3243.788 kb on + strand, within CA264_13895at 3243.875 kb on + strand, within CA264_13895at 3243.876 kb on - strand, within CA264_13895at 3244.016 kb on + strandat 3244.031 kb on - strandat 3244.065 kb on + strandat 3244.068 kb on + strandat 3244.321 kb on + strand, within CA264_13900at 3244.355 kb on - strand, within CA264_13900at 3244.431 kb on + strand, within CA264_13900at 3244.432 kb on - strand, within CA264_13900at 3244.549 kb on + strand, within CA264_13900at 3244.549 kb on + strand, within CA264_13900at 3244.550 kb on - strand, within CA264_13900at 3244.550 kb on - strand, within CA264_13900at 3244.554 kb on + strand, within CA264_13900at 3244.557 kb on - strand, within CA264_13900at 3244.557 kb on - strand, within CA264_13900at 3244.594 kb on - strand, within CA264_13900at 3244.621 kb on - strand, within CA264_13900at 3244.655 kb on + strand, within CA264_13900at 3244.656 kb on - strand, within CA264_13900at 3244.716 kb on + strand, within CA264_13900at 3244.816 kb on - strand, within CA264_13900at 3245.176 kb on - strandat 3245.338 kb on + strandat 3245.338 kb on + strandat 3245.339 kb on - strandat 3245.343 kb on - strandat 3245.356 kb on - strandat 3245.491 kb on + strand, within CA264_13905at 3245.491 kb on + strand, within CA264_13905at 3245.493 kb on + strand, within CA264_13905at 3245.494 kb on - strand, within CA264_13905at 3245.494 kb on - strand, within CA264_13905at 3245.563 kb on + strand, within CA264_13905at 3245.622 kb on - strand, within CA264_13905at 3245.649 kb on - strand, within CA264_13905at 3245.649 kb on - strand, within CA264_13905at 3245.714 kb on + strand, within CA264_13905at 3245.714 kb on + strand, within CA264_13905at 3245.714 kb on + strand, within CA264_13905at 3245.715 kb on - strand, within CA264_13905at 3245.761 kb on + strand, within CA264_13905at 3245.761 kb on + strand, within CA264_13905at 3245.762 kb on - strand, within CA264_13905at 3245.838 kb on + strand, within CA264_13905

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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3,243,249 + CA264_13895 0.37 +0.3
3,243,250 - CA264_13895 0.37 +1.9
3,243,350 + CA264_13895 0.44 +0.1
3,243,351 - CA264_13895 0.45 -0.2
3,243,518 - CA264_13895 0.58 -0.4
3,243,518 - CA264_13895 0.58 +0.5
3,243,545 + CA264_13895 0.60 -0.7
3,243,741 - CA264_13895 0.75 -0.4
3,243,783 + CA264_13895 0.79 -0.4
3,243,788 + CA264_13895 0.79 +0.0
3,243,788 + CA264_13895 0.79 -0.5
3,243,875 + CA264_13895 0.86 -0.3
3,243,876 - CA264_13895 0.86 +0.4
3,244,016 + +0.6
3,244,031 - -2.1
3,244,065 + -0.2
3,244,068 + -0.1
3,244,321 + CA264_13900 0.12 -1.1
3,244,355 - CA264_13900 0.16 -0.1
3,244,431 + CA264_13900 0.23 -0.7
3,244,432 - CA264_13900 0.23 -0.5
3,244,549 + CA264_13900 0.34 -1.3
3,244,549 + CA264_13900 0.34 -1.0
3,244,550 - CA264_13900 0.34 +0.1
3,244,550 - CA264_13900 0.34 +0.4
3,244,554 + CA264_13900 0.34 -0.0
3,244,557 - CA264_13900 0.35 -1.1
3,244,557 - CA264_13900 0.35 -0.2
3,244,594 - CA264_13900 0.38 -1.8
3,244,621 - CA264_13900 0.41 -1.0
3,244,655 + CA264_13900 0.44 +0.1
3,244,656 - CA264_13900 0.44 -0.3
3,244,716 + CA264_13900 0.50 -2.9
3,244,816 - CA264_13900 0.59 -0.2
3,245,176 - -1.2
3,245,338 + -0.0
3,245,338 + -0.8
3,245,339 - -0.6
3,245,343 - +0.7
3,245,356 - -0.5
3,245,491 + CA264_13905 0.20 +0.3
3,245,491 + CA264_13905 0.20 +0.0
3,245,493 + CA264_13905 0.20 +0.8
3,245,494 - CA264_13905 0.20 -0.2
3,245,494 - CA264_13905 0.20 -0.2
3,245,563 + CA264_13905 0.26 +0.1
3,245,622 - CA264_13905 0.30 +1.1
3,245,649 - CA264_13905 0.33 +0.8
3,245,649 - CA264_13905 0.33 +0.8
3,245,714 + CA264_13905 0.38 +0.3
3,245,714 + CA264_13905 0.38 -3.2
3,245,714 + CA264_13905 0.38 -0.8
3,245,715 - CA264_13905 0.38 +0.3
3,245,761 + CA264_13905 0.42 +0.2
3,245,761 + CA264_13905 0.42 +0.1
3,245,762 - CA264_13905 0.42 -0.8
3,245,838 + CA264_13905 0.48 +0.0

Or see this region's nucleotide sequence