Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13310

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13305 and CA264_13310 are separated by 475 nucleotidesCA264_13310 and CA264_13315 are separated by 74 nucleotides CA264_13305: CA264_13305 - DNA mismatch repair protein MutL, at 3,101,484 to 3,103,346 _13305 CA264_13310: CA264_13310 - glycosyl hydrolase, at 3,103,822 to 3,106,722 _13310 CA264_13315: CA264_13315 - N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA, at 3,106,797 to 3,107,933 _13315 Position (kb) 3103 3104 3105 3106 3107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3103.365 kb on - strandat 3103.371 kb on - strandat 3103.371 kb on - strandat 3103.373 kb on - strandat 3103.373 kb on - strandat 3103.373 kb on - strandat 3103.375 kb on - strandat 3103.389 kb on + strandat 3103.430 kb on + strandat 3103.476 kb on - strandat 3103.544 kb on + strandat 3103.544 kb on + strandat 3103.600 kb on + strandat 3103.600 kb on + strandat 3103.618 kb on - strandat 3103.634 kb on + strandat 3103.681 kb on + strandat 3103.727 kb on - strandat 3103.752 kb on + strandat 3103.756 kb on - strandat 3103.756 kb on - strandat 3103.760 kb on + strandat 3103.765 kb on + strandat 3103.770 kb on + strandat 3103.770 kb on + strandat 3103.788 kb on + strandat 3103.788 kb on + strandat 3103.988 kb on + strandat 3104.025 kb on + strandat 3104.031 kb on + strandat 3104.032 kb on - strandat 3104.032 kb on - strandat 3104.200 kb on + strand, within CA264_13310at 3104.365 kb on + strand, within CA264_13310at 3104.395 kb on - strand, within CA264_13310at 3104.472 kb on + strand, within CA264_13310at 3104.558 kb on + strand, within CA264_13310at 3104.559 kb on - strand, within CA264_13310at 3104.560 kb on + strand, within CA264_13310at 3104.560 kb on + strand, within CA264_13310at 3104.561 kb on - strand, within CA264_13310at 3104.573 kb on + strand, within CA264_13310at 3104.618 kb on + strand, within CA264_13310at 3104.648 kb on - strand, within CA264_13310at 3104.649 kb on + strand, within CA264_13310at 3104.650 kb on - strand, within CA264_13310at 3104.690 kb on + strand, within CA264_13310at 3104.701 kb on + strand, within CA264_13310at 3104.702 kb on - strand, within CA264_13310at 3104.702 kb on - strand, within CA264_13310at 3104.702 kb on - strand, within CA264_13310at 3104.702 kb on - strand, within CA264_13310at 3104.703 kb on + strand, within CA264_13310at 3104.717 kb on + strand, within CA264_13310at 3104.771 kb on + strand, within CA264_13310at 3104.775 kb on + strand, within CA264_13310at 3104.775 kb on + strand, within CA264_13310at 3104.776 kb on - strand, within CA264_13310at 3104.776 kb on - strand, within CA264_13310at 3104.776 kb on - strand, within CA264_13310at 3104.776 kb on - strand, within CA264_13310at 3104.870 kb on - strand, within CA264_13310at 3104.884 kb on - strand, within CA264_13310at 3104.890 kb on + strand, within CA264_13310at 3104.893 kb on - strand, within CA264_13310at 3105.173 kb on + strand, within CA264_13310at 3105.271 kb on + strand, within CA264_13310at 3105.514 kb on + strand, within CA264_13310at 3105.658 kb on + strand, within CA264_13310at 3105.665 kb on - strand, within CA264_13310at 3105.667 kb on + strand, within CA264_13310at 3105.667 kb on + strand, within CA264_13310at 3105.668 kb on - strand, within CA264_13310at 3105.668 kb on - strand, within CA264_13310at 3105.668 kb on - strand, within CA264_13310at 3105.673 kb on + strand, within CA264_13310at 3105.673 kb on + strand, within CA264_13310at 3105.674 kb on - strand, within CA264_13310at 3105.716 kb on + strand, within CA264_13310at 3105.716 kb on + strand, within CA264_13310at 3105.716 kb on + strand, within CA264_13310at 3105.716 kb on + strand, within CA264_13310at 3105.716 kb on + strand, within CA264_13310at 3105.716 kb on + strand, within CA264_13310at 3105.716 kb on + strand, within CA264_13310at 3105.726 kb on + strand, within CA264_13310at 3105.804 kb on + strand, within CA264_13310at 3105.804 kb on + strand, within CA264_13310at 3105.944 kb on - strand, within CA264_13310at 3105.967 kb on + strand, within CA264_13310at 3105.967 kb on + strand, within CA264_13310at 3105.983 kb on + strand, within CA264_13310at 3105.994 kb on + strand, within CA264_13310at 3106.082 kb on - strand, within CA264_13310at 3106.082 kb on - strand, within CA264_13310at 3106.106 kb on - strand, within CA264_13310at 3106.174 kb on + strand, within CA264_13310at 3106.174 kb on + strand, within CA264_13310at 3106.204 kb on + strand, within CA264_13310at 3106.204 kb on + strand, within CA264_13310at 3106.261 kb on + strand, within CA264_13310at 3106.261 kb on + strand, within CA264_13310at 3106.261 kb on + strand, within CA264_13310at 3106.261 kb on + strand, within CA264_13310at 3106.262 kb on - strand, within CA264_13310at 3106.262 kb on - strand, within CA264_13310at 3106.402 kb on + strand, within CA264_13310at 3106.402 kb on + strand, within CA264_13310at 3106.417 kb on + strand, within CA264_13310at 3106.462 kb on - strandat 3106.584 kb on - strandat 3106.659 kb on - strandat 3106.659 kb on - strandat 3106.664 kb on - strandat 3106.682 kb on + strandat 3106.683 kb on - strandat 3106.683 kb on - strandat 3106.697 kb on - strandat 3106.699 kb on - strandat 3106.734 kb on + strandat 3106.734 kb on + strandat 3106.735 kb on - strandat 3106.740 kb on - strandat 3106.809 kb on - strandat 3106.846 kb on + strandat 3106.858 kb on + strandat 3106.858 kb on + strandat 3106.859 kb on - strandat 3106.859 kb on - strandat 3106.859 kb on - strandat 3106.887 kb on - strandat 3106.899 kb on - strandat 3106.905 kb on + strandat 3106.905 kb on + strandat 3106.960 kb on + strand, within CA264_13315at 3106.962 kb on + strand, within CA264_13315at 3106.963 kb on - strand, within CA264_13315at 3106.963 kb on - strand, within CA264_13315at 3106.965 kb on - strand, within CA264_13315at 3106.965 kb on - strand, within CA264_13315at 3106.965 kb on - strand, within CA264_13315at 3107.056 kb on + strand, within CA264_13315at 3107.057 kb on - strand, within CA264_13315at 3107.113 kb on + strand, within CA264_13315at 3107.114 kb on - strand, within CA264_13315at 3107.211 kb on - strand, within CA264_13315at 3107.275 kb on - strand, within CA264_13315at 3107.275 kb on - strand, within CA264_13315at 3107.275 kb on - strand, within CA264_13315at 3107.280 kb on + strand, within CA264_13315at 3107.281 kb on - strand, within CA264_13315at 3107.321 kb on + strand, within CA264_13315at 3107.425 kb on + strand, within CA264_13315at 3107.425 kb on + strand, within CA264_13315at 3107.425 kb on + strand, within CA264_13315at 3107.607 kb on - strand, within CA264_13315

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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3,103,365 - +1.0
3,103,371 - -0.5
3,103,371 - +0.0
3,103,373 - -0.4
3,103,373 - -2.0
3,103,373 - +0.2
3,103,375 - +0.0
3,103,389 + -0.3
3,103,430 + -0.6
3,103,476 - -1.1
3,103,544 + -0.2
3,103,544 + -1.3
3,103,600 + -2.5
3,103,600 + +1.0
3,103,618 - -1.6
3,103,634 + -0.5
3,103,681 + -0.2
3,103,727 - -0.7
3,103,752 + +1.3
3,103,756 - -0.8
3,103,756 - -0.1
3,103,760 + -0.2
3,103,765 + +0.6
3,103,770 + -0.3
3,103,770 + +0.2
3,103,788 + +0.6
3,103,788 + +0.6
3,103,988 + +1.4
3,104,025 + +1.7
3,104,031 + +1.9
3,104,032 - +0.8
3,104,032 - -0.1
3,104,200 + CA264_13310 0.13 +0.3
3,104,365 + CA264_13310 0.19 -0.3
3,104,395 - CA264_13310 0.20 -2.1
3,104,472 + CA264_13310 0.22 +0.6
3,104,558 + CA264_13310 0.25 +0.2
3,104,559 - CA264_13310 0.25 -0.1
3,104,560 + CA264_13310 0.25 +0.3
3,104,560 + CA264_13310 0.25 +0.1
3,104,561 - CA264_13310 0.25 +0.5
3,104,573 + CA264_13310 0.26 +0.4
3,104,618 + CA264_13310 0.27 -0.1
3,104,648 - CA264_13310 0.28 +0.6
3,104,649 + CA264_13310 0.29 -0.1
3,104,650 - CA264_13310 0.29 -0.5
3,104,690 + CA264_13310 0.30 -0.0
3,104,701 + CA264_13310 0.30 -1.3
3,104,702 - CA264_13310 0.30 +0.4
3,104,702 - CA264_13310 0.30 +0.6
3,104,702 - CA264_13310 0.30 -0.3
3,104,702 - CA264_13310 0.30 +0.1
3,104,703 + CA264_13310 0.30 -1.0
3,104,717 + CA264_13310 0.31 +0.6
3,104,771 + CA264_13310 0.33 -0.3
3,104,775 + CA264_13310 0.33 -0.2
3,104,775 + CA264_13310 0.33 -0.5
3,104,776 - CA264_13310 0.33 +0.2
3,104,776 - CA264_13310 0.33 +0.3
3,104,776 - CA264_13310 0.33 -0.6
3,104,776 - CA264_13310 0.33 -0.8
3,104,870 - CA264_13310 0.36 +0.1
3,104,884 - CA264_13310 0.37 +1.4
3,104,890 + CA264_13310 0.37 +0.2
3,104,893 - CA264_13310 0.37 -0.1
3,105,173 + CA264_13310 0.47 -1.2
3,105,271 + CA264_13310 0.50 -0.3
3,105,514 + CA264_13310 0.58 +0.1
3,105,658 + CA264_13310 0.63 +0.0
3,105,665 - CA264_13310 0.64 -0.4
3,105,667 + CA264_13310 0.64 -0.3
3,105,667 + CA264_13310 0.64 +0.7
3,105,668 - CA264_13310 0.64 -0.0
3,105,668 - CA264_13310 0.64 +0.6
3,105,668 - CA264_13310 0.64 +0.4
3,105,673 + CA264_13310 0.64 +0.3
3,105,673 + CA264_13310 0.64 -0.3
3,105,674 - CA264_13310 0.64 +0.3
3,105,716 + CA264_13310 0.65 -0.1
3,105,716 + CA264_13310 0.65 +0.5
3,105,716 + CA264_13310 0.65 -0.1
3,105,716 + CA264_13310 0.65 +1.0
3,105,716 + CA264_13310 0.65 +0.6
3,105,716 + CA264_13310 0.65 +0.2
3,105,716 + CA264_13310 0.65 -0.4
3,105,726 + CA264_13310 0.66 +0.2
3,105,804 + CA264_13310 0.68 +0.2
3,105,804 + CA264_13310 0.68 +0.4
3,105,944 - CA264_13310 0.73 -0.2
3,105,967 + CA264_13310 0.74 +0.1
3,105,967 + CA264_13310 0.74 -0.3
3,105,983 + CA264_13310 0.74 +0.3
3,105,994 + CA264_13310 0.75 -0.2
3,106,082 - CA264_13310 0.78 +0.8
3,106,082 - CA264_13310 0.78 -0.2
3,106,106 - CA264_13310 0.79 +0.0
3,106,174 + CA264_13310 0.81 +0.1
3,106,174 + CA264_13310 0.81 +1.0
3,106,204 + CA264_13310 0.82 -0.9
3,106,204 + CA264_13310 0.82 +0.8
3,106,261 + CA264_13310 0.84 -0.4
3,106,261 + CA264_13310 0.84 +0.0
3,106,261 + CA264_13310 0.84 +0.2
3,106,261 + CA264_13310 0.84 -0.0
3,106,262 - CA264_13310 0.84 +0.5
3,106,262 - CA264_13310 0.84 +0.4
3,106,402 + CA264_13310 0.89 +1.0
3,106,402 + CA264_13310 0.89 +0.0
3,106,417 + CA264_13310 0.89 -0.4
3,106,462 - -0.1
3,106,584 - +0.1
3,106,659 - +0.3
3,106,659 - +0.2
3,106,664 - +1.3
3,106,682 + +1.4
3,106,683 - -0.1
3,106,683 - +0.3
3,106,697 - -0.1
3,106,699 - -0.3
3,106,734 + +0.3
3,106,734 + -0.0
3,106,735 - +0.3
3,106,740 - +0.8
3,106,809 - -2.0
3,106,846 + -1.2
3,106,858 + -0.8
3,106,858 + -1.3
3,106,859 - -1.1
3,106,859 - -1.8
3,106,859 - -1.3
3,106,887 - -1.9
3,106,899 - -1.2
3,106,905 + -1.6
3,106,905 + -1.9
3,106,960 + CA264_13315 0.14 -1.3
3,106,962 + CA264_13315 0.15 -1.1
3,106,963 - CA264_13315 0.15 -3.4
3,106,963 - CA264_13315 0.15 -1.9
3,106,965 - CA264_13315 0.15 -0.9
3,106,965 - CA264_13315 0.15 -0.3
3,106,965 - CA264_13315 0.15 -1.2
3,107,056 + CA264_13315 0.23 +0.4
3,107,057 - CA264_13315 0.23 -1.7
3,107,113 + CA264_13315 0.28 -1.7
3,107,114 - CA264_13315 0.28 -1.7
3,107,211 - CA264_13315 0.36 -1.5
3,107,275 - CA264_13315 0.42 -0.1
3,107,275 - CA264_13315 0.42 -1.3
3,107,275 - CA264_13315 0.42 -1.6
3,107,280 + CA264_13315 0.42 -1.5
3,107,281 - CA264_13315 0.43 -1.7
3,107,321 + CA264_13315 0.46 -1.4
3,107,425 + CA264_13315 0.55 -1.6
3,107,425 + CA264_13315 0.55 -0.5
3,107,425 + CA264_13315 0.55 -3.0
3,107,607 - CA264_13315 0.71 -1.5

Or see this region's nucleotide sequence