Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11350

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11340 and CA264_11345 are separated by 194 nucleotidesCA264_11345 and CA264_11350 are separated by 30 nucleotidesCA264_11350 and CA264_11355 are separated by 15 nucleotides CA264_11340: CA264_11340 - glycerol-3-phosphate transporter, at 2,627,389 to 2,628,732 _11340 CA264_11345: CA264_11345 - aquaporin, at 2,628,927 to 2,629,658 _11345 CA264_11350: CA264_11350 - glycerol kinase, at 2,629,689 to 2,631,173 _11350 CA264_11355: CA264_11355 - FAD-dependent oxidoreductase, at 2,631,189 to 2,632,751 _11355 Position (kb) 2629 2630 2631 2632Strain fitness (log2 ratio) -2 -1 0 1 2at 2628.724 kb on - strandat 2628.724 kb on - strandat 2628.724 kb on - strandat 2628.751 kb on + strandat 2628.751 kb on + strandat 2628.752 kb on - strandat 2628.860 kb on + strandat 2629.146 kb on + strand, within CA264_11345at 2629.172 kb on + strand, within CA264_11345at 2629.211 kb on - strand, within CA264_11345at 2629.257 kb on + strand, within CA264_11345at 2629.258 kb on - strand, within CA264_11345at 2629.328 kb on + strand, within CA264_11345at 2629.379 kb on + strand, within CA264_11345at 2629.379 kb on + strand, within CA264_11345at 2629.379 kb on + strand, within CA264_11345at 2629.380 kb on - strand, within CA264_11345at 2629.380 kb on - strand, within CA264_11345at 2629.380 kb on - strand, within CA264_11345at 2629.633 kb on - strandat 2629.633 kb on - strandat 2629.634 kb on + strandat 2629.635 kb on - strandat 2629.691 kb on - strandat 2629.771 kb on + strandat 2629.876 kb on - strand, within CA264_11350at 2629.876 kb on - strand, within CA264_11350at 2629.956 kb on + strand, within CA264_11350at 2629.957 kb on - strand, within CA264_11350at 2629.976 kb on + strand, within CA264_11350at 2630.014 kb on + strand, within CA264_11350at 2630.148 kb on + strand, within CA264_11350at 2630.148 kb on + strand, within CA264_11350at 2630.274 kb on + strand, within CA264_11350at 2630.281 kb on + strand, within CA264_11350at 2630.281 kb on + strand, within CA264_11350at 2630.342 kb on + strand, within CA264_11350at 2630.369 kb on + strand, within CA264_11350at 2630.369 kb on + strand, within CA264_11350at 2630.369 kb on + strand, within CA264_11350at 2630.369 kb on + strand, within CA264_11350at 2630.370 kb on - strand, within CA264_11350at 2630.370 kb on - strand, within CA264_11350at 2630.386 kb on + strand, within CA264_11350at 2630.386 kb on - strand, within CA264_11350at 2630.387 kb on - strand, within CA264_11350at 2630.390 kb on + strand, within CA264_11350at 2630.466 kb on - strand, within CA264_11350at 2630.526 kb on + strand, within CA264_11350at 2630.556 kb on - strand, within CA264_11350at 2630.602 kb on + strand, within CA264_11350at 2630.603 kb on - strand, within CA264_11350at 2630.734 kb on - strand, within CA264_11350at 2630.885 kb on - strand, within CA264_11350at 2630.885 kb on - strand, within CA264_11350at 2630.956 kb on - strand, within CA264_11350at 2630.956 kb on - strand, within CA264_11350at 2630.958 kb on - strand, within CA264_11350at 2630.986 kb on - strand, within CA264_11350at 2631.061 kb on + strandat 2631.061 kb on + strandat 2631.062 kb on - strandat 2631.118 kb on - strandat 2631.118 kb on - strandat 2631.134 kb on + strandat 2631.134 kb on + strandat 2631.134 kb on + strandat 2631.137 kb on + strandat 2631.137 kb on + strandat 2631.137 kb on + strandat 2631.138 kb on - strandat 2631.138 kb on - strandat 2631.159 kb on + strandat 2631.161 kb on + strandat 2631.164 kb on - strandat 2631.180 kb on + strandat 2631.181 kb on - strandat 2631.186 kb on - strandat 2631.186 kb on - strandat 2631.226 kb on + strandat 2631.226 kb on + strandat 2631.242 kb on - strandat 2632.156 kb on + strand, within CA264_11355

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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2,628,724 - -0.5
2,628,724 - -0.6
2,628,724 - -0.2
2,628,751 + +0.5
2,628,751 + +0.1
2,628,752 - -0.2
2,628,860 + +0.1
2,629,146 + CA264_11345 0.30 +0.5
2,629,172 + CA264_11345 0.33 -0.7
2,629,211 - CA264_11345 0.39 +1.7
2,629,257 + CA264_11345 0.45 +0.3
2,629,258 - CA264_11345 0.45 +1.1
2,629,328 + CA264_11345 0.55 +1.3
2,629,379 + CA264_11345 0.62 -0.2
2,629,379 + CA264_11345 0.62 +0.5
2,629,379 + CA264_11345 0.62 +0.4
2,629,380 - CA264_11345 0.62 +0.3
2,629,380 - CA264_11345 0.62 -0.6
2,629,380 - CA264_11345 0.62 +0.7
2,629,633 - -0.6
2,629,633 - +0.2
2,629,634 + -0.2
2,629,635 - +0.6
2,629,691 - -0.3
2,629,771 + -0.1
2,629,876 - CA264_11350 0.13 +0.8
2,629,876 - CA264_11350 0.13 +0.3
2,629,956 + CA264_11350 0.18 +0.4
2,629,957 - CA264_11350 0.18 -0.0
2,629,976 + CA264_11350 0.19 +0.7
2,630,014 + CA264_11350 0.22 -0.1
2,630,148 + CA264_11350 0.31 +0.1
2,630,148 + CA264_11350 0.31 +0.4
2,630,274 + CA264_11350 0.39 -0.9
2,630,281 + CA264_11350 0.40 -0.4
2,630,281 + CA264_11350 0.40 -0.7
2,630,342 + CA264_11350 0.44 +1.1
2,630,369 + CA264_11350 0.46 -0.1
2,630,369 + CA264_11350 0.46 -0.7
2,630,369 + CA264_11350 0.46 -0.6
2,630,369 + CA264_11350 0.46 -0.1
2,630,370 - CA264_11350 0.46 -0.1
2,630,370 - CA264_11350 0.46 +0.7
2,630,386 + CA264_11350 0.47 +1.7
2,630,386 - CA264_11350 0.47 -0.3
2,630,387 - CA264_11350 0.47 +2.3
2,630,390 + CA264_11350 0.47 -0.2
2,630,466 - CA264_11350 0.52 +1.3
2,630,526 + CA264_11350 0.56 +0.2
2,630,556 - CA264_11350 0.58 +0.5
2,630,602 + CA264_11350 0.61 +0.1
2,630,603 - CA264_11350 0.62 -0.7
2,630,734 - CA264_11350 0.70 -0.3
2,630,885 - CA264_11350 0.81 +0.6
2,630,885 - CA264_11350 0.81 -0.2
2,630,956 - CA264_11350 0.85 +0.3
2,630,956 - CA264_11350 0.85 +0.9
2,630,958 - CA264_11350 0.85 +1.0
2,630,986 - CA264_11350 0.87 +0.2
2,631,061 + -0.0
2,631,061 + -0.5
2,631,062 - +0.0
2,631,118 - -0.3
2,631,118 - +0.4
2,631,134 + -1.0
2,631,134 + +0.0
2,631,134 + +0.8
2,631,137 + +0.3
2,631,137 + -0.3
2,631,137 + +0.1
2,631,138 - -0.1
2,631,138 - -0.8
2,631,159 + +0.3
2,631,161 + +0.4
2,631,164 - -1.3
2,631,180 + +0.5
2,631,181 - +0.6
2,631,186 - +1.5
2,631,186 - -0.1
2,631,226 + +0.2
2,631,226 + -2.6
2,631,242 - +0.1
2,632,156 + CA264_11355 0.62 -0.6

Or see this region's nucleotide sequence