Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09345

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09335 and CA264_09340 are separated by 259 nucleotidesCA264_09340 and CA264_09345 are separated by 147 nucleotidesCA264_09345 and CA264_09350 are separated by 193 nucleotides CA264_09335: CA264_09335 - serine hydrolase, at 2,181,635 to 2,182,873 _09335 CA264_09340: CA264_09340 - hypothetical protein, at 2,183,133 to 2,183,531 _09340 CA264_09345: CA264_09345 - 4-hydroxyphenylpyruvate dioxygenase, at 2,183,679 to 2,184,773 _09345 CA264_09350: CA264_09350 - phosphoglucomutase, at 2,184,967 to 2,186,700 _09350 Position (kb) 2183 2184 2185Strain fitness (log2 ratio) -1 0 1 2at 2182.856 kb on + strandat 2182.857 kb on - strandat 2182.862 kb on - strandat 2182.874 kb on - strandat 2182.874 kb on - strandat 2182.885 kb on - strandat 2182.903 kb on + strandat 2182.929 kb on - strandat 2182.933 kb on + strandat 2182.938 kb on + strandat 2183.085 kb on + strandat 2183.308 kb on + strand, within CA264_09340at 2183.308 kb on + strand, within CA264_09340at 2183.309 kb on - strand, within CA264_09340at 2183.309 kb on - strand, within CA264_09340at 2183.309 kb on - strand, within CA264_09340at 2183.309 kb on - strand, within CA264_09340at 2183.309 kb on - strand, within CA264_09340at 2183.325 kb on + strand, within CA264_09340at 2183.325 kb on + strand, within CA264_09340at 2183.325 kb on + strand, within CA264_09340at 2183.325 kb on + strand, within CA264_09340at 2183.326 kb on - strand, within CA264_09340at 2183.326 kb on - strand, within CA264_09340at 2183.343 kb on + strand, within CA264_09340at 2183.344 kb on - strand, within CA264_09340at 2183.390 kb on - strand, within CA264_09340at 2183.433 kb on + strand, within CA264_09340at 2183.434 kb on - strand, within CA264_09340at 2183.444 kb on - strand, within CA264_09340at 2183.537 kb on - strandat 2183.541 kb on + strandat 2183.595 kb on - strandat 2183.649 kb on + strandat 2183.662 kb on - strandat 2183.670 kb on + strandat 2183.728 kb on - strandat 2183.761 kb on - strandat 2183.929 kb on + strand, within CA264_09345at 2184.022 kb on + strand, within CA264_09345at 2184.083 kb on + strand, within CA264_09345at 2184.134 kb on - strand, within CA264_09345at 2184.178 kb on - strand, within CA264_09345at 2184.178 kb on - strand, within CA264_09345at 2184.178 kb on - strand, within CA264_09345at 2184.202 kb on + strand, within CA264_09345at 2184.238 kb on - strand, within CA264_09345at 2184.343 kb on - strand, within CA264_09345at 2184.347 kb on + strand, within CA264_09345at 2184.402 kb on + strand, within CA264_09345at 2184.472 kb on + strand, within CA264_09345at 2184.507 kb on + strand, within CA264_09345at 2184.507 kb on + strand, within CA264_09345at 2184.522 kb on + strand, within CA264_09345at 2184.523 kb on - strand, within CA264_09345at 2184.523 kb on - strand, within CA264_09345at 2184.525 kb on + strand, within CA264_09345at 2184.525 kb on + strand, within CA264_09345at 2184.526 kb on - strand, within CA264_09345at 2184.526 kb on - strand, within CA264_09345at 2184.526 kb on - strand, within CA264_09345at 2184.578 kb on + strandat 2184.579 kb on - strand, within CA264_09345at 2184.579 kb on - strand, within CA264_09345at 2184.618 kb on + strand, within CA264_09345at 2184.669 kb on + strandat 2184.720 kb on - strandat 2184.771 kb on + strandat 2184.772 kb on - strandat 2184.800 kb on - strandat 2184.828 kb on + strandat 2184.829 kb on - strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.831 kb on - strandat 2184.834 kb on + strandat 2184.834 kb on + strandat 2184.836 kb on + strandat 2184.945 kb on - strandat 2184.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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2,182,856 + +0.9
2,182,857 - +0.6
2,182,862 - -0.7
2,182,874 - +0.7
2,182,874 - +0.2
2,182,885 - +0.1
2,182,903 + +0.1
2,182,929 - -0.8
2,182,933 + -0.2
2,182,938 + -0.5
2,183,085 + -0.9
2,183,308 + CA264_09340 0.44 +0.6
2,183,308 + CA264_09340 0.44 +0.1
2,183,309 - CA264_09340 0.44 +0.1
2,183,309 - CA264_09340 0.44 -0.2
2,183,309 - CA264_09340 0.44 +0.1
2,183,309 - CA264_09340 0.44 +0.6
2,183,309 - CA264_09340 0.44 +0.8
2,183,325 + CA264_09340 0.48 +0.2
2,183,325 + CA264_09340 0.48 +2.4
2,183,325 + CA264_09340 0.48 -1.4
2,183,325 + CA264_09340 0.48 +1.4
2,183,326 - CA264_09340 0.48 +0.2
2,183,326 - CA264_09340 0.48 -0.6
2,183,343 + CA264_09340 0.53 +0.2
2,183,344 - CA264_09340 0.53 +0.3
2,183,390 - CA264_09340 0.64 -0.3
2,183,433 + CA264_09340 0.75 +0.2
2,183,434 - CA264_09340 0.75 -0.7
2,183,444 - CA264_09340 0.78 +0.3
2,183,537 - -0.5
2,183,541 + +0.2
2,183,595 - -1.4
2,183,649 + +0.2
2,183,662 - -0.1
2,183,670 + +0.0
2,183,728 - +1.1
2,183,761 - -0.0
2,183,929 + CA264_09345 0.23 -1.4
2,184,022 + CA264_09345 0.31 -0.0
2,184,083 + CA264_09345 0.37 +0.1
2,184,134 - CA264_09345 0.42 -0.9
2,184,178 - CA264_09345 0.46 -0.0
2,184,178 - CA264_09345 0.46 +0.6
2,184,178 - CA264_09345 0.46 -0.7
2,184,202 + CA264_09345 0.48 +0.6
2,184,238 - CA264_09345 0.51 -0.3
2,184,343 - CA264_09345 0.61 -0.6
2,184,347 + CA264_09345 0.61 +0.4
2,184,402 + CA264_09345 0.66 +0.7
2,184,472 + CA264_09345 0.72 -0.5
2,184,507 + CA264_09345 0.76 +0.4
2,184,507 + CA264_09345 0.76 +0.0
2,184,522 + CA264_09345 0.77 +0.0
2,184,523 - CA264_09345 0.77 -0.6
2,184,523 - CA264_09345 0.77 +0.4
2,184,525 + CA264_09345 0.77 -0.7
2,184,525 + CA264_09345 0.77 -0.2
2,184,526 - CA264_09345 0.77 -0.2
2,184,526 - CA264_09345 0.77 -0.8
2,184,526 - CA264_09345 0.77 +0.2
2,184,578 + +1.6
2,184,579 - CA264_09345 0.82 +1.8
2,184,579 - CA264_09345 0.82 +0.3
2,184,618 + CA264_09345 0.86 -0.2
2,184,669 + +0.4
2,184,720 - +0.4
2,184,771 + -0.1
2,184,772 - -0.2
2,184,800 - -0.4
2,184,828 + -0.3
2,184,829 - +0.5
2,184,830 + -0.1
2,184,830 + +1.0
2,184,830 + +0.5
2,184,830 + -0.5
2,184,830 + +0.4
2,184,830 + -0.5
2,184,830 + -0.1
2,184,831 - -0.5
2,184,834 + +0.5
2,184,834 + -0.4
2,184,836 + -1.7
2,184,945 - +1.8
2,184,967 - +0.3

Or see this region's nucleotide sequence