Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02385

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02380 and CA264_02385 are separated by 212 nucleotidesCA264_02385 and CA264_02390 are separated by 72 nucleotides CA264_02380: CA264_02380 - homoserine dehydrogenase, at 550,252 to 551,511 _02380 CA264_02385: CA264_02385 - hypothetical protein, at 551,724 to 552,410 _02385 CA264_02390: CA264_02390 - diaminopimelate decarboxylase, at 552,483 to 553,625 _02390 Position (kb) 551 552 553Strain fitness (log2 ratio) -1 0 1 2at 550.879 kb on - strand, within CA264_02380at 550.909 kb on - strand, within CA264_02380at 550.909 kb on - strand, within CA264_02380at 550.910 kb on + strand, within CA264_02380at 550.910 kb on + strand, within CA264_02380at 550.911 kb on - strand, within CA264_02380at 550.911 kb on - strand, within CA264_02380at 550.911 kb on - strand, within CA264_02380at 551.053 kb on + strand, within CA264_02380at 551.098 kb on + strand, within CA264_02380at 551.191 kb on + strand, within CA264_02380at 551.197 kb on + strand, within CA264_02380at 551.197 kb on + strand, within CA264_02380at 551.198 kb on - strand, within CA264_02380at 551.198 kb on - strand, within CA264_02380at 551.218 kb on + strand, within CA264_02380at 551.276 kb on + strand, within CA264_02380at 551.279 kb on - strand, within CA264_02380at 551.279 kb on - strand, within CA264_02380at 551.346 kb on - strand, within CA264_02380at 551.457 kb on + strandat 551.458 kb on - strandat 551.475 kb on - strandat 551.537 kb on - strandat 551.564 kb on - strandat 551.568 kb on - strandat 551.574 kb on - strandat 551.672 kb on - strandat 551.695 kb on + strandat 551.695 kb on + strandat 551.696 kb on - strandat 551.771 kb on - strandat 551.792 kb on + strandat 551.793 kb on - strand, within CA264_02385at 551.793 kb on - strand, within CA264_02385at 551.829 kb on - strand, within CA264_02385at 551.836 kb on - strand, within CA264_02385at 551.837 kb on + strand, within CA264_02385at 551.837 kb on + strand, within CA264_02385at 551.841 kb on + strand, within CA264_02385at 551.841 kb on + strand, within CA264_02385at 551.842 kb on - strand, within CA264_02385at 551.842 kb on - strand, within CA264_02385at 551.842 kb on - strand, within CA264_02385at 551.847 kb on + strand, within CA264_02385at 551.953 kb on - strand, within CA264_02385at 551.954 kb on + strand, within CA264_02385at 552.085 kb on + strand, within CA264_02385at 552.086 kb on - strand, within CA264_02385at 552.086 kb on - strand, within CA264_02385at 552.090 kb on + strand, within CA264_02385at 552.090 kb on + strand, within CA264_02385at 552.091 kb on - strand, within CA264_02385at 552.152 kb on - strand, within CA264_02385at 552.152 kb on - strand, within CA264_02385at 552.294 kb on + strand, within CA264_02385at 552.414 kb on - strandat 552.414 kb on - strandat 552.468 kb on + strandat 552.470 kb on + strandat 552.490 kb on + strandat 552.490 kb on + strandat 552.521 kb on - strandat 552.688 kb on - strand, within CA264_02390at 552.720 kb on + strand, within CA264_02390at 552.781 kb on + strand, within CA264_02390at 552.932 kb on - strand, within CA264_02390at 552.932 kb on - strand, within CA264_02390at 552.932 kb on - strand, within CA264_02390at 553.014 kb on + strand, within CA264_02390at 553.022 kb on + strand, within CA264_02390at 553.035 kb on - strand, within CA264_02390at 553.102 kb on - strand, within CA264_02390at 553.183 kb on + strand, within CA264_02390at 553.184 kb on - strand, within CA264_02390at 553.184 kb on - strand, within CA264_02390at 553.187 kb on + strand, within CA264_02390at 553.188 kb on - strand, within CA264_02390at 553.287 kb on - strand, within CA264_02390at 553.333 kb on - strand, within CA264_02390

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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550,879 - CA264_02380 0.50 +0.3
550,909 - CA264_02380 0.52 -0.1
550,909 - CA264_02380 0.52 +0.0
550,910 + CA264_02380 0.52 -0.9
550,910 + CA264_02380 0.52 +0.5
550,911 - CA264_02380 0.52 +0.9
550,911 - CA264_02380 0.52 +0.5
550,911 - CA264_02380 0.52 -0.5
551,053 + CA264_02380 0.64 -0.9
551,098 + CA264_02380 0.67 +0.3
551,191 + CA264_02380 0.75 -1.7
551,197 + CA264_02380 0.75 -0.2
551,197 + CA264_02380 0.75 -0.8
551,198 - CA264_02380 0.75 -0.1
551,198 - CA264_02380 0.75 -0.1
551,218 + CA264_02380 0.77 -0.5
551,276 + CA264_02380 0.81 -1.0
551,279 - CA264_02380 0.82 -0.1
551,279 - CA264_02380 0.82 +0.9
551,346 - CA264_02380 0.87 +0.3
551,457 + -0.4
551,458 - -0.8
551,475 - +0.1
551,537 - +0.1
551,564 - +0.9
551,568 - +0.4
551,574 - -0.5
551,672 - -0.6
551,695 + -0.4
551,695 + -0.1
551,696 - -0.7
551,771 - +0.6
551,792 + -0.5
551,793 - CA264_02385 0.10 -1.6
551,793 - CA264_02385 0.10 -0.0
551,829 - CA264_02385 0.15 +0.1
551,836 - CA264_02385 0.16 -0.4
551,837 + CA264_02385 0.16 -0.1
551,837 + CA264_02385 0.16 +0.8
551,841 + CA264_02385 0.17 +0.1
551,841 + CA264_02385 0.17 +1.0
551,842 - CA264_02385 0.17 +1.2
551,842 - CA264_02385 0.17 -0.2
551,842 - CA264_02385 0.17 +0.4
551,847 + CA264_02385 0.18 +0.3
551,953 - CA264_02385 0.33 -0.6
551,954 + CA264_02385 0.33 +2.3
552,085 + CA264_02385 0.53 -0.4
552,086 - CA264_02385 0.53 +1.3
552,086 - CA264_02385 0.53 -0.3
552,090 + CA264_02385 0.53 +0.6
552,090 + CA264_02385 0.53 -0.4
552,091 - CA264_02385 0.53 +0.1
552,152 - CA264_02385 0.62 -1.2
552,152 - CA264_02385 0.62 -0.1
552,294 + CA264_02385 0.83 -0.1
552,414 - -0.8
552,414 - -0.1
552,468 + -0.9
552,470 + -0.3
552,490 + -0.1
552,490 + +0.2
552,521 - +1.1
552,688 - CA264_02390 0.18 +1.1
552,720 + CA264_02390 0.21 -0.0
552,781 + CA264_02390 0.26 +0.1
552,932 - CA264_02390 0.39 -0.8
552,932 - CA264_02390 0.39 +0.3
552,932 - CA264_02390 0.39 -0.5
553,014 + CA264_02390 0.46 -0.1
553,022 + CA264_02390 0.47 -0.7
553,035 - CA264_02390 0.48 +0.2
553,102 - CA264_02390 0.54 -0.4
553,183 + CA264_02390 0.61 -0.0
553,184 - CA264_02390 0.61 +0.2
553,184 - CA264_02390 0.61 -0.0
553,187 + CA264_02390 0.62 +0.8
553,188 - CA264_02390 0.62 -0.0
553,287 - CA264_02390 0.70 +0.0
553,333 - CA264_02390 0.74 -0.5

Or see this region's nucleotide sequence