Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02095

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02090 and CA264_02095 are separated by 100 nucleotidesCA264_02095 and CA264_02100 are separated by 120 nucleotides CA264_02090: CA264_02090 - peptidase M28, at 481,849 to 483,147 _02090 CA264_02095: CA264_02095 - AI-2E family transporter, at 483,248 to 484,306 _02095 CA264_02100: CA264_02100 - Clp protease ClpC, at 484,427 to 487,024 _02100 Position (kb) 483 484 485Strain fitness (log2 ratio) -2 -1 0 1 2at 482.257 kb on + strand, within CA264_02090at 482.258 kb on - strand, within CA264_02090at 482.273 kb on + strand, within CA264_02090at 482.273 kb on + strand, within CA264_02090at 482.274 kb on - strand, within CA264_02090at 482.355 kb on - strand, within CA264_02090at 482.355 kb on - strand, within CA264_02090at 482.375 kb on - strand, within CA264_02090at 482.375 kb on - strand, within CA264_02090at 482.459 kb on + strand, within CA264_02090at 482.524 kb on + strand, within CA264_02090at 482.539 kb on + strand, within CA264_02090at 482.540 kb on - strand, within CA264_02090at 482.540 kb on - strand, within CA264_02090at 482.540 kb on - strand, within CA264_02090at 482.562 kb on + strand, within CA264_02090at 482.563 kb on - strand, within CA264_02090at 482.564 kb on + strand, within CA264_02090at 482.565 kb on - strand, within CA264_02090at 482.565 kb on - strand, within CA264_02090at 482.565 kb on - strand, within CA264_02090at 482.595 kb on + strand, within CA264_02090at 482.600 kb on - strand, within CA264_02090at 482.600 kb on - strand, within CA264_02090at 482.655 kb on - strand, within CA264_02090at 482.707 kb on + strand, within CA264_02090at 482.707 kb on + strand, within CA264_02090at 482.708 kb on - strand, within CA264_02090at 482.708 kb on - strand, within CA264_02090at 482.708 kb on - strand, within CA264_02090at 482.830 kb on + strand, within CA264_02090at 482.830 kb on + strand, within CA264_02090at 482.831 kb on - strand, within CA264_02090at 482.867 kb on - strand, within CA264_02090at 483.198 kb on - strandat 483.236 kb on + strandat 483.236 kb on + strandat 483.256 kb on + strandat 483.257 kb on - strandat 483.267 kb on + strandat 483.290 kb on + strandat 483.567 kb on - strand, within CA264_02095at 483.607 kb on - strand, within CA264_02095at 483.675 kb on - strand, within CA264_02095at 483.676 kb on + strand, within CA264_02095at 483.677 kb on - strand, within CA264_02095at 483.755 kb on - strand, within CA264_02095at 483.755 kb on - strand, within CA264_02095at 483.767 kb on + strand, within CA264_02095at 483.768 kb on - strand, within CA264_02095at 483.768 kb on - strand, within CA264_02095at 483.811 kb on - strand, within CA264_02095at 483.833 kb on + strand, within CA264_02095at 483.834 kb on - strand, within CA264_02095at 483.837 kb on - strand, within CA264_02095at 483.844 kb on + strand, within CA264_02095at 483.845 kb on - strand, within CA264_02095at 483.846 kb on + strand, within CA264_02095at 483.950 kb on - strand, within CA264_02095at 483.951 kb on + strand, within CA264_02095at 483.952 kb on - strand, within CA264_02095at 483.952 kb on - strand, within CA264_02095at 484.022 kb on + strand, within CA264_02095at 484.023 kb on - strand, within CA264_02095at 484.054 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.132 kb on + strand, within CA264_02095at 484.305 kb on - strandat 484.319 kb on - strandat 484.414 kb on + strandat 484.415 kb on - strandat 484.421 kb on + strandat 484.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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482,257 + CA264_02090 0.31 -0.5
482,258 - CA264_02090 0.31 -0.4
482,273 + CA264_02090 0.33 +0.6
482,273 + CA264_02090 0.33 +0.1
482,274 - CA264_02090 0.33 -1.0
482,355 - CA264_02090 0.39 +1.0
482,355 - CA264_02090 0.39 +0.1
482,375 - CA264_02090 0.40 +0.7
482,375 - CA264_02090 0.40 -1.3
482,459 + CA264_02090 0.47 +0.6
482,524 + CA264_02090 0.52 -0.2
482,539 + CA264_02090 0.53 -0.5
482,540 - CA264_02090 0.53 -0.7
482,540 - CA264_02090 0.53 -0.5
482,540 - CA264_02090 0.53 +0.2
482,562 + CA264_02090 0.55 -0.7
482,563 - CA264_02090 0.55 +0.7
482,564 + CA264_02090 0.55 +0.5
482,565 - CA264_02090 0.55 -0.5
482,565 - CA264_02090 0.55 +0.5
482,565 - CA264_02090 0.55 +1.1
482,595 + CA264_02090 0.57 +0.6
482,600 - CA264_02090 0.58 -1.6
482,600 - CA264_02090 0.58 -1.8
482,655 - CA264_02090 0.62 +0.3
482,707 + CA264_02090 0.66 +0.6
482,707 + CA264_02090 0.66 +0.4
482,708 - CA264_02090 0.66 -0.1
482,708 - CA264_02090 0.66 +0.7
482,708 - CA264_02090 0.66 +0.1
482,830 + CA264_02090 0.76 -0.2
482,830 + CA264_02090 0.76 -0.2
482,831 - CA264_02090 0.76 -0.4
482,867 - CA264_02090 0.78 +0.2
483,198 - -0.4
483,236 + +0.4
483,236 + +0.1
483,256 + +0.0
483,257 - -0.4
483,267 + -1.8
483,290 + +0.3
483,567 - CA264_02095 0.30 +1.9
483,607 - CA264_02095 0.34 -0.3
483,675 - CA264_02095 0.40 +0.4
483,676 + CA264_02095 0.40 -2.1
483,677 - CA264_02095 0.41 -0.3
483,755 - CA264_02095 0.48 -1.3
483,755 - CA264_02095 0.48 +1.2
483,767 + CA264_02095 0.49 +0.1
483,768 - CA264_02095 0.49 +0.1
483,768 - CA264_02095 0.49 +0.4
483,811 - CA264_02095 0.53 -0.4
483,833 + CA264_02095 0.55 -0.2
483,834 - CA264_02095 0.55 -0.9
483,837 - CA264_02095 0.56 +0.1
483,844 + CA264_02095 0.56 -1.2
483,845 - CA264_02095 0.56 -0.4
483,846 + CA264_02095 0.56 +0.3
483,950 - CA264_02095 0.66 +0.1
483,951 + CA264_02095 0.66 +0.4
483,952 - CA264_02095 0.66 -1.2
483,952 - CA264_02095 0.66 +1.5
484,022 + CA264_02095 0.73 +0.7
484,023 - CA264_02095 0.73 -2.3
484,054 + CA264_02095 0.76 -0.1
484,132 + CA264_02095 0.83 +0.1
484,132 + CA264_02095 0.83 -1.3
484,132 + CA264_02095 0.83 -0.5
484,132 + CA264_02095 0.83 -0.5
484,132 + CA264_02095 0.83 +0.4
484,305 - -0.4
484,319 - -0.4
484,414 + -0.8
484,415 - +0.3
484,421 + -0.7
484,422 - -0.3

Or see this region's nucleotide sequence