Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27170 and ABIE40_RS27175 are separated by 852 nucleotides
ABIE40_RS27170: ABIE40_RS27170 - inositol monophosphatase, at 151,921 to 152,751
_RS27170
ABIE40_RS27175: ABIE40_RS27175 - hypothetical protein, at 153,604 to 153,861
_RS27175
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 150.922 kb on + strand at 150.922 kb on + strand at 150.922 kb on + strand at 150.923 kb on - strand at 151.097 kb on + strand at 151.098 kb on - strand at 151.197 kb on + strand at 151.348 kb on + strand at 151.349 kb on - strand at 151.371 kb on + strand at 151.408 kb on - strand at 151.408 kb on - strand at 151.468 kb on - strand at 151.527 kb on + strand at 151.527 kb on + strand at 151.528 kb on - strand at 151.537 kb on + strand at 151.591 kb on + strand at 151.591 kb on + strand at 151.658 kb on - strand at 151.751 kb on + strand at 151.751 kb on + strand at 151.784 kb on + strand at 151.857 kb on + strand at 151.858 kb on - strand at 151.928 kb on + strand at 151.928 kb on + strand at 151.929 kb on - strand at 151.978 kb on + strand at 152.101 kb on + strand, within ABIE40_RS27170 at 152.101 kb on + strand, within ABIE40_RS27170 at 152.257 kb on + strand, within ABIE40_RS27170 at 152.257 kb on + strand, within ABIE40_RS27170 at 152.364 kb on - strand, within ABIE40_RS27170 at 152.367 kb on + strand, within ABIE40_RS27170 at 152.368 kb on + strand, within ABIE40_RS27170 at 152.368 kb on + strand, within ABIE40_RS27170 at 152.368 kb on + strand, within ABIE40_RS27170 at 152.368 kb on + strand, within ABIE40_RS27170 at 152.368 kb on + strand, within ABIE40_RS27170 at 152.368 kb on + strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.369 kb on - strand, within ABIE40_RS27170 at 152.370 kb on + strand, within ABIE40_RS27170 at 152.370 kb on + strand, within ABIE40_RS27170 at 152.371 kb on - strand, within ABIE40_RS27170 at 152.371 kb on - strand, within ABIE40_RS27170 at 152.398 kb on + strand, within ABIE40_RS27170 at 152.398 kb on + strand, within ABIE40_RS27170 at 152.412 kb on + strand, within ABIE40_RS27170 at 152.614 kb on + strand, within ABIE40_RS27170 at 152.614 kb on + strand, within ABIE40_RS27170 at 152.614 kb on + strand, within ABIE40_RS27170 at 152.615 kb on - strand, within ABIE40_RS27170 at 152.704 kb on + strand at 152.704 kb on + strand at 152.705 kb on - strand at 152.705 kb on - strand at 152.705 kb on - strand at 152.708 kb on + strand at 152.709 kb on - strand at 152.715 kb on + strand at 152.729 kb on - strand at 152.729 kb on - strand at 152.790 kb on + strand at 152.791 kb on - strand at 152.828 kb on + strand at 152.830 kb on + strand at 152.989 kb on - strand at 152.989 kb on - strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.003 kb on - strand at 153.054 kb on + strand at 153.091 kb on - strand at 153.113 kb on + strand at 153.213 kb on - strand at 153.251 kb on + strand at 153.251 kb on + strand at 153.252 kb on - strand at 153.387 kb on + strand at 153.392 kb on - strand at 153.446 kb on - strand at 153.498 kb on + strand at 153.499 kb on - strand at 153.645 kb on + strand, within ABIE40_RS27175 at 153.645 kb on + strand, within ABIE40_RS27175 at 153.645 kb on + strand, within ABIE40_RS27175 at 153.646 kb on - strand, within ABIE40_RS27175 at 153.649 kb on + strand, within ABIE40_RS27175 at 153.649 kb on + strand, within ABIE40_RS27175
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 150,922 + -2.3 150,922 + +0.3 150,922 + -0.8 150,923 - -0.1 151,097 + -1.6 151,098 - +0.1 151,197 + -0.0 151,348 + -1.7 151,349 - -0.5 151,371 + -0.0 151,408 - -1.4 151,408 - -1.0 151,468 - +0.8 151,527 + -0.8 151,527 + -1.4 151,528 - -1.4 151,537 + -0.6 151,591 + +0.6 151,591 + +1.3 151,658 - -0.3 151,751 + +0.2 151,751 + +0.6 151,784 + -0.4 151,857 + +0.7 151,858 - -0.4 151,928 + +1.2 151,928 + +1.9 151,929 - -0.2 151,978 + +0.5 152,101 + ABIE40_RS27170 0.22 -0.6 152,101 + ABIE40_RS27170 0.22 +0.7 152,257 + ABIE40_RS27170 0.40 +1.1 152,257 + ABIE40_RS27170 0.40 +0.2 152,364 - ABIE40_RS27170 0.53 -2.0 152,367 + ABIE40_RS27170 0.54 -0.3 152,368 + ABIE40_RS27170 0.54 -1.7 152,368 + ABIE40_RS27170 0.54 +0.4 152,368 + ABIE40_RS27170 0.54 +1.5 152,368 + ABIE40_RS27170 0.54 -2.5 152,368 + ABIE40_RS27170 0.54 +0.8 152,368 + ABIE40_RS27170 0.54 -0.4 152,369 - ABIE40_RS27170 0.54 -0.0 152,369 - ABIE40_RS27170 0.54 -0.2 152,369 - ABIE40_RS27170 0.54 +2.8 152,369 - ABIE40_RS27170 0.54 -0.1 152,369 - ABIE40_RS27170 0.54 -1.7 152,369 - ABIE40_RS27170 0.54 -1.9 152,369 - ABIE40_RS27170 0.54 -0.1 152,369 - ABIE40_RS27170 0.54 +0.3 152,369 - ABIE40_RS27170 0.54 -0.6 152,369 - ABIE40_RS27170 0.54 -2.7 152,370 + ABIE40_RS27170 0.54 -2.6 152,370 + ABIE40_RS27170 0.54 +0.3 152,371 - ABIE40_RS27170 0.54 -0.8 152,371 - ABIE40_RS27170 0.54 +0.0 152,398 + ABIE40_RS27170 0.57 +0.0 152,398 + ABIE40_RS27170 0.57 -1.6 152,412 + ABIE40_RS27170 0.59 +0.4 152,614 + ABIE40_RS27170 0.83 +0.4 152,614 + ABIE40_RS27170 0.83 +0.4 152,614 + ABIE40_RS27170 0.83 +0.4 152,615 - ABIE40_RS27170 0.84 -0.3 152,704 + -2.3 152,704 + +2.6 152,705 - -0.0 152,705 - +0.1 152,705 - +1.1 152,708 + -0.6 152,709 - -0.5 152,715 + +0.1 152,729 - -1.0 152,729 - +0.3 152,790 + +0.4 152,791 - +0.5 152,828 + -1.7 152,830 + -0.5 152,989 - +0.5 152,989 - -0.4 153,000 + +1.6 153,000 + -0.2 153,000 + -2.9 153,001 - -0.2 153,001 - +1.1 153,003 - +1.4 153,054 + +0.8 153,091 - +1.6 153,113 + -0.1 153,213 - -0.2 153,251 + -1.6 153,251 + -0.5 153,252 - -0.8 153,387 + +0.0 153,392 - +0.1 153,446 - +0.1 153,498 + -1.1 153,499 - +1.8 153,645 + ABIE40_RS27175 0.16 +0.6 153,645 + ABIE40_RS27175 0.16 -1.4 153,645 + ABIE40_RS27175 0.16 -2.5 153,646 - ABIE40_RS27175 0.16 +0.2 153,649 + ABIE40_RS27175 0.17 +0.2 153,649 + ABIE40_RS27175 0.17 +0.8
Or see this region's nucleotide sequence