Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS19305 and ABIE40_RS19310 are separated by 96 nucleotides ABIE40_RS19310 and ABIE40_RS19315 are separated by 203 nucleotides
ABIE40_RS19305: ABIE40_RS19305 - glutathione S-transferase family protein, at 3,875,264 to 3,876,217
_RS19305
ABIE40_RS19310: ABIE40_RS19310 - fumarylacetoacetate hydrolase family protein, at 3,876,314 to 3,877,156
_RS19310
ABIE40_RS19315: ABIE40_RS19315 - polyhydroxyalkanoate depolymerase, at 3,877,360 to 3,878,631
_RS19315
Position (kb)
3876
3877
3878 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3875.426 kb on + strand, within ABIE40_RS19305 at 3875.426 kb on + strand, within ABIE40_RS19305 at 3875.427 kb on - strand, within ABIE40_RS19305 at 3875.427 kb on - strand, within ABIE40_RS19305 at 3875.435 kb on + strand, within ABIE40_RS19305 at 3875.435 kb on + strand, within ABIE40_RS19305 at 3875.436 kb on - strand, within ABIE40_RS19305 at 3875.436 kb on - strand, within ABIE40_RS19305 at 3875.444 kb on + strand, within ABIE40_RS19305 at 3875.444 kb on + strand, within ABIE40_RS19305 at 3875.444 kb on + strand, within ABIE40_RS19305 at 3875.445 kb on - strand, within ABIE40_RS19305 at 3875.445 kb on - strand, within ABIE40_RS19305 at 3875.445 kb on - strand, within ABIE40_RS19305 at 3875.445 kb on - strand, within ABIE40_RS19305 at 3875.446 kb on + strand, within ABIE40_RS19305 at 3875.446 kb on + strand, within ABIE40_RS19305 at 3875.446 kb on + strand, within ABIE40_RS19305 at 3875.446 kb on + strand, within ABIE40_RS19305 at 3875.446 kb on + strand, within ABIE40_RS19305 at 3875.446 kb on + strand, within ABIE40_RS19305 at 3875.446 kb on + strand, within ABIE40_RS19305 at 3875.446 kb on + strand, within ABIE40_RS19305 at 3875.447 kb on - strand, within ABIE40_RS19305 at 3875.447 kb on - strand, within ABIE40_RS19305 at 3875.447 kb on - strand, within ABIE40_RS19305 at 3875.447 kb on - strand, within ABIE40_RS19305 at 3875.447 kb on - strand, within ABIE40_RS19305 at 3875.447 kb on - strand, within ABIE40_RS19305 at 3875.603 kb on + strand, within ABIE40_RS19305 at 3875.603 kb on + strand, within ABIE40_RS19305 at 3875.604 kb on - strand, within ABIE40_RS19305 at 3875.604 kb on - strand, within ABIE40_RS19305 at 3875.605 kb on + strand, within ABIE40_RS19305 at 3875.605 kb on + strand, within ABIE40_RS19305 at 3875.606 kb on - strand, within ABIE40_RS19305 at 3875.606 kb on - strand, within ABIE40_RS19305 at 3875.620 kb on + strand, within ABIE40_RS19305 at 3875.620 kb on + strand, within ABIE40_RS19305 at 3875.988 kb on + strand, within ABIE40_RS19305 at 3876.017 kb on + strand, within ABIE40_RS19305 at 3876.133 kb on + strand at 3876.133 kb on + strand at 3876.134 kb on - strand at 3876.146 kb on + strand at 3876.147 kb on - strand at 3876.149 kb on + strand at 3876.150 kb on - strand at 3876.248 kb on - strand at 3876.274 kb on + strand at 3876.274 kb on + strand at 3876.274 kb on + strand at 3876.274 kb on + strand at 3876.274 kb on + strand at 3876.274 kb on + strand at 3876.275 kb on - strand at 3876.275 kb on - strand at 3876.275 kb on - strand at 3876.275 kb on - strand at 3876.275 kb on - strand at 3876.548 kb on + strand, within ABIE40_RS19310 at 3876.746 kb on + strand, within ABIE40_RS19310 at 3876.746 kb on + strand, within ABIE40_RS19310 at 3876.746 kb on + strand, within ABIE40_RS19310 at 3876.747 kb on - strand, within ABIE40_RS19310 at 3876.747 kb on - strand, within ABIE40_RS19310 at 3876.962 kb on + strand, within ABIE40_RS19310 at 3876.963 kb on - strand, within ABIE40_RS19310 at 3876.986 kb on + strand, within ABIE40_RS19310 at 3876.986 kb on + strand, within ABIE40_RS19310 at 3876.986 kb on + strand, within ABIE40_RS19310 at 3876.986 kb on + strand, within ABIE40_RS19310 at 3877.077 kb on - strand at 3877.234 kb on + strand at 3877.238 kb on + strand at 3877.238 kb on + strand at 3877.239 kb on - strand at 3877.239 kb on - strand at 3877.239 kb on - strand at 3877.246 kb on + strand at 3877.265 kb on - strand at 3877.366 kb on + strand at 3877.375 kb on + strand at 3877.375 kb on + strand at 3877.375 kb on + strand at 3877.375 kb on + strand at 3877.375 kb on + strand at 3877.376 kb on - strand at 3877.376 kb on - strand at 3877.376 kb on - strand at 3877.376 kb on - strand at 3877.376 kb on - strand at 3877.702 kb on + strand, within ABIE40_RS19315 at 3877.702 kb on + strand, within ABIE40_RS19315 at 3877.702 kb on + strand, within ABIE40_RS19315 at 3877.702 kb on + strand, within ABIE40_RS19315 at 3877.703 kb on - strand, within ABIE40_RS19315 at 3877.703 kb on - strand, within ABIE40_RS19315 at 3877.753 kb on - strand, within ABIE40_RS19315 at 3877.756 kb on + strand, within ABIE40_RS19315 at 3877.756 kb on + strand, within ABIE40_RS19315 at 3877.756 kb on + strand, within ABIE40_RS19315 at 3877.756 kb on + strand, within ABIE40_RS19315 at 3877.756 kb on + strand, within ABIE40_RS19315 at 3877.757 kb on - strand, within ABIE40_RS19315 at 3877.757 kb on - strand, within ABIE40_RS19315 at 3877.822 kb on + strand, within ABIE40_RS19315 at 3877.831 kb on + strand, within ABIE40_RS19315 at 3877.832 kb on - strand, within ABIE40_RS19315 at 3877.832 kb on - strand, within ABIE40_RS19315 at 3877.832 kb on - strand, within ABIE40_RS19315 at 3877.832 kb on - strand, within ABIE40_RS19315 at 3878.028 kb on + strand, within ABIE40_RS19315 at 3878.028 kb on + strand, within ABIE40_RS19315 at 3878.029 kb on - strand, within ABIE40_RS19315
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 3,875,426 + ABIE40_RS19305 0.17 +0.1 3,875,426 + ABIE40_RS19305 0.17 +0.7 3,875,427 - ABIE40_RS19305 0.17 -0.1 3,875,427 - ABIE40_RS19305 0.17 -0.8 3,875,435 + ABIE40_RS19305 0.18 -0.5 3,875,435 + ABIE40_RS19305 0.18 -0.5 3,875,436 - ABIE40_RS19305 0.18 -0.1 3,875,436 - ABIE40_RS19305 0.18 -0.2 3,875,444 + ABIE40_RS19305 0.19 +0.1 3,875,444 + ABIE40_RS19305 0.19 -1.1 3,875,444 + ABIE40_RS19305 0.19 -1.7 3,875,445 - ABIE40_RS19305 0.19 -0.5 3,875,445 - ABIE40_RS19305 0.19 -0.2 3,875,445 - ABIE40_RS19305 0.19 -0.6 3,875,445 - ABIE40_RS19305 0.19 +0.8 3,875,446 + ABIE40_RS19305 0.19 -0.2 3,875,446 + ABIE40_RS19305 0.19 +1.1 3,875,446 + ABIE40_RS19305 0.19 -2.1 3,875,446 + ABIE40_RS19305 0.19 +0.3 3,875,446 + ABIE40_RS19305 0.19 +0.1 3,875,446 + ABIE40_RS19305 0.19 +1.4 3,875,446 + ABIE40_RS19305 0.19 +0.6 3,875,446 + ABIE40_RS19305 0.19 +0.2 3,875,447 - ABIE40_RS19305 0.19 +0.2 3,875,447 - ABIE40_RS19305 0.19 -0.3 3,875,447 - ABIE40_RS19305 0.19 +0.4 3,875,447 - ABIE40_RS19305 0.19 +0.3 3,875,447 - ABIE40_RS19305 0.19 +1.0 3,875,447 - ABIE40_RS19305 0.19 -1.8 3,875,603 + ABIE40_RS19305 0.36 +3.8 3,875,603 + ABIE40_RS19305 0.36 +0.0 3,875,604 - ABIE40_RS19305 0.36 -1.5 3,875,604 - ABIE40_RS19305 0.36 -1.7 3,875,605 + ABIE40_RS19305 0.36 -0.5 3,875,605 + ABIE40_RS19305 0.36 +0.4 3,875,606 - ABIE40_RS19305 0.36 -0.3 3,875,606 - ABIE40_RS19305 0.36 +0.8 3,875,620 + ABIE40_RS19305 0.37 +0.4 3,875,620 + ABIE40_RS19305 0.37 -0.2 3,875,988 + ABIE40_RS19305 0.76 +1.0 3,876,017 + ABIE40_RS19305 0.79 +0.1 3,876,133 + -2.8 3,876,133 + -0.0 3,876,134 - +0.8 3,876,146 + +0.3 3,876,147 - -0.7 3,876,149 + -0.3 3,876,150 - +0.6 3,876,248 - -1.0 3,876,274 + -1.7 3,876,274 + -0.0 3,876,274 + -0.5 3,876,274 + -1.3 3,876,274 + -2.2 3,876,274 + -1.3 3,876,275 - -0.9 3,876,275 - -1.3 3,876,275 - -0.8 3,876,275 - -1.8 3,876,275 - -2.5 3,876,548 + ABIE40_RS19310 0.28 -1.4 3,876,746 + ABIE40_RS19310 0.51 -0.6 3,876,746 + ABIE40_RS19310 0.51 -1.9 3,876,746 + ABIE40_RS19310 0.51 -1.7 3,876,747 - ABIE40_RS19310 0.51 -2.6 3,876,747 - ABIE40_RS19310 0.51 -0.5 3,876,962 + ABIE40_RS19310 0.77 -1.0 3,876,963 - ABIE40_RS19310 0.77 -2.7 3,876,986 + ABIE40_RS19310 0.80 -1.3 3,876,986 + ABIE40_RS19310 0.80 -1.4 3,876,986 + ABIE40_RS19310 0.80 +1.8 3,876,986 + ABIE40_RS19310 0.80 -1.1 3,877,077 - -3.5 3,877,234 + -0.6 3,877,238 + +0.0 3,877,238 + -1.3 3,877,239 - +0.2 3,877,239 - +0.1 3,877,239 - -0.5 3,877,246 + +1.8 3,877,265 - +1.1 3,877,366 + -0.2 3,877,375 + -0.4 3,877,375 + -0.7 3,877,375 + +0.4 3,877,375 + +0.4 3,877,375 + -0.2 3,877,376 - -0.2 3,877,376 - -0.1 3,877,376 - +1.0 3,877,376 - +0.8 3,877,376 - -2.4 3,877,702 + ABIE40_RS19315 0.27 -0.3 3,877,702 + ABIE40_RS19315 0.27 -1.5 3,877,702 + ABIE40_RS19315 0.27 -1.1 3,877,702 + ABIE40_RS19315 0.27 +1.2 3,877,703 - ABIE40_RS19315 0.27 +2.0 3,877,703 - ABIE40_RS19315 0.27 -0.0 3,877,753 - ABIE40_RS19315 0.31 +0.2 3,877,756 + ABIE40_RS19315 0.31 +0.0 3,877,756 + ABIE40_RS19315 0.31 +0.1 3,877,756 + ABIE40_RS19315 0.31 -1.7 3,877,756 + ABIE40_RS19315 0.31 -0.3 3,877,756 + ABIE40_RS19315 0.31 +0.9 3,877,757 - ABIE40_RS19315 0.31 -0.9 3,877,757 - ABIE40_RS19315 0.31 -0.4 3,877,822 + ABIE40_RS19315 0.36 +0.3 3,877,831 + ABIE40_RS19315 0.37 +1.2 3,877,832 - ABIE40_RS19315 0.37 +0.7 3,877,832 - ABIE40_RS19315 0.37 +1.0 3,877,832 - ABIE40_RS19315 0.37 +0.5 3,877,832 - ABIE40_RS19315 0.37 -1.4 3,878,028 + ABIE40_RS19315 0.53 +1.8 3,878,028 + ABIE40_RS19315 0.53 +0.3 3,878,029 - ABIE40_RS19315 0.53 -0.4
Or see this region's nucleotide sequence