Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19310

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19305 and ABIE40_RS19310 are separated by 96 nucleotidesABIE40_RS19310 and ABIE40_RS19315 are separated by 203 nucleotides ABIE40_RS19305: ABIE40_RS19305 - glutathione S-transferase family protein, at 3,875,264 to 3,876,217 _RS19305 ABIE40_RS19310: ABIE40_RS19310 - fumarylacetoacetate hydrolase family protein, at 3,876,314 to 3,877,156 _RS19310 ABIE40_RS19315: ABIE40_RS19315 - polyhydroxyalkanoate depolymerase, at 3,877,360 to 3,878,631 _RS19315 Position (kb) 3876 3877 3878Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3875.426 kb on + strand, within ABIE40_RS19305at 3875.426 kb on + strand, within ABIE40_RS19305at 3875.427 kb on - strand, within ABIE40_RS19305at 3875.427 kb on - strand, within ABIE40_RS19305at 3875.435 kb on + strand, within ABIE40_RS19305at 3875.435 kb on + strand, within ABIE40_RS19305at 3875.436 kb on - strand, within ABIE40_RS19305at 3875.436 kb on - strand, within ABIE40_RS19305at 3875.444 kb on + strand, within ABIE40_RS19305at 3875.444 kb on + strand, within ABIE40_RS19305at 3875.444 kb on + strand, within ABIE40_RS19305at 3875.445 kb on - strand, within ABIE40_RS19305at 3875.445 kb on - strand, within ABIE40_RS19305at 3875.445 kb on - strand, within ABIE40_RS19305at 3875.445 kb on - strand, within ABIE40_RS19305at 3875.446 kb on + strand, within ABIE40_RS19305at 3875.446 kb on + strand, within ABIE40_RS19305at 3875.446 kb on + strand, within ABIE40_RS19305at 3875.446 kb on + strand, within ABIE40_RS19305at 3875.446 kb on + strand, within ABIE40_RS19305at 3875.446 kb on + strand, within ABIE40_RS19305at 3875.446 kb on + strand, within ABIE40_RS19305at 3875.446 kb on + strand, within ABIE40_RS19305at 3875.447 kb on - strand, within ABIE40_RS19305at 3875.447 kb on - strand, within ABIE40_RS19305at 3875.447 kb on - strand, within ABIE40_RS19305at 3875.447 kb on - strand, within ABIE40_RS19305at 3875.447 kb on - strand, within ABIE40_RS19305at 3875.447 kb on - strand, within ABIE40_RS19305at 3875.603 kb on + strand, within ABIE40_RS19305at 3875.603 kb on + strand, within ABIE40_RS19305at 3875.604 kb on - strand, within ABIE40_RS19305at 3875.604 kb on - strand, within ABIE40_RS19305at 3875.605 kb on + strand, within ABIE40_RS19305at 3875.605 kb on + strand, within ABIE40_RS19305at 3875.606 kb on - strand, within ABIE40_RS19305at 3875.606 kb on - strand, within ABIE40_RS19305at 3875.620 kb on + strand, within ABIE40_RS19305at 3875.620 kb on + strand, within ABIE40_RS19305at 3875.988 kb on + strand, within ABIE40_RS19305at 3876.017 kb on + strand, within ABIE40_RS19305at 3876.133 kb on + strandat 3876.133 kb on + strandat 3876.134 kb on - strandat 3876.146 kb on + strandat 3876.147 kb on - strandat 3876.149 kb on + strandat 3876.150 kb on - strandat 3876.248 kb on - strandat 3876.274 kb on + strandat 3876.274 kb on + strandat 3876.274 kb on + strandat 3876.274 kb on + strandat 3876.274 kb on + strandat 3876.274 kb on + strandat 3876.275 kb on - strandat 3876.275 kb on - strandat 3876.275 kb on - strandat 3876.275 kb on - strandat 3876.275 kb on - strandat 3876.548 kb on + strand, within ABIE40_RS19310at 3876.746 kb on + strand, within ABIE40_RS19310at 3876.746 kb on + strand, within ABIE40_RS19310at 3876.746 kb on + strand, within ABIE40_RS19310at 3876.747 kb on - strand, within ABIE40_RS19310at 3876.747 kb on - strand, within ABIE40_RS19310at 3876.962 kb on + strand, within ABIE40_RS19310at 3876.963 kb on - strand, within ABIE40_RS19310at 3876.986 kb on + strand, within ABIE40_RS19310at 3876.986 kb on + strand, within ABIE40_RS19310at 3876.986 kb on + strand, within ABIE40_RS19310at 3876.986 kb on + strand, within ABIE40_RS19310at 3877.077 kb on - strandat 3877.234 kb on + strandat 3877.238 kb on + strandat 3877.238 kb on + strandat 3877.239 kb on - strandat 3877.239 kb on - strandat 3877.239 kb on - strandat 3877.246 kb on + strandat 3877.265 kb on - strandat 3877.366 kb on + strandat 3877.375 kb on + strandat 3877.375 kb on + strandat 3877.375 kb on + strandat 3877.375 kb on + strandat 3877.375 kb on + strandat 3877.376 kb on - strandat 3877.376 kb on - strandat 3877.376 kb on - strandat 3877.376 kb on - strandat 3877.376 kb on - strandat 3877.702 kb on + strand, within ABIE40_RS19315at 3877.702 kb on + strand, within ABIE40_RS19315at 3877.702 kb on + strand, within ABIE40_RS19315at 3877.702 kb on + strand, within ABIE40_RS19315at 3877.703 kb on - strand, within ABIE40_RS19315at 3877.703 kb on - strand, within ABIE40_RS19315at 3877.753 kb on - strand, within ABIE40_RS19315at 3877.756 kb on + strand, within ABIE40_RS19315at 3877.756 kb on + strand, within ABIE40_RS19315at 3877.756 kb on + strand, within ABIE40_RS19315at 3877.756 kb on + strand, within ABIE40_RS19315at 3877.756 kb on + strand, within ABIE40_RS19315at 3877.757 kb on - strand, within ABIE40_RS19315at 3877.757 kb on - strand, within ABIE40_RS19315at 3877.822 kb on + strand, within ABIE40_RS19315at 3877.831 kb on + strand, within ABIE40_RS19315at 3877.832 kb on - strand, within ABIE40_RS19315at 3877.832 kb on - strand, within ABIE40_RS19315at 3877.832 kb on - strand, within ABIE40_RS19315at 3877.832 kb on - strand, within ABIE40_RS19315at 3878.028 kb on + strand, within ABIE40_RS19315at 3878.028 kb on + strand, within ABIE40_RS19315at 3878.029 kb on - strand, within ABIE40_RS19315

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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3,875,426 + ABIE40_RS19305 0.17 +0.1
3,875,426 + ABIE40_RS19305 0.17 +0.7
3,875,427 - ABIE40_RS19305 0.17 -0.1
3,875,427 - ABIE40_RS19305 0.17 -0.8
3,875,435 + ABIE40_RS19305 0.18 -0.5
3,875,435 + ABIE40_RS19305 0.18 -0.5
3,875,436 - ABIE40_RS19305 0.18 -0.1
3,875,436 - ABIE40_RS19305 0.18 -0.2
3,875,444 + ABIE40_RS19305 0.19 +0.1
3,875,444 + ABIE40_RS19305 0.19 -1.1
3,875,444 + ABIE40_RS19305 0.19 -1.7
3,875,445 - ABIE40_RS19305 0.19 -0.5
3,875,445 - ABIE40_RS19305 0.19 -0.2
3,875,445 - ABIE40_RS19305 0.19 -0.6
3,875,445 - ABIE40_RS19305 0.19 +0.8
3,875,446 + ABIE40_RS19305 0.19 -0.2
3,875,446 + ABIE40_RS19305 0.19 +1.1
3,875,446 + ABIE40_RS19305 0.19 -2.1
3,875,446 + ABIE40_RS19305 0.19 +0.3
3,875,446 + ABIE40_RS19305 0.19 +0.1
3,875,446 + ABIE40_RS19305 0.19 +1.4
3,875,446 + ABIE40_RS19305 0.19 +0.6
3,875,446 + ABIE40_RS19305 0.19 +0.2
3,875,447 - ABIE40_RS19305 0.19 +0.2
3,875,447 - ABIE40_RS19305 0.19 -0.3
3,875,447 - ABIE40_RS19305 0.19 +0.4
3,875,447 - ABIE40_RS19305 0.19 +0.3
3,875,447 - ABIE40_RS19305 0.19 +1.0
3,875,447 - ABIE40_RS19305 0.19 -1.8
3,875,603 + ABIE40_RS19305 0.36 +3.8
3,875,603 + ABIE40_RS19305 0.36 +0.0
3,875,604 - ABIE40_RS19305 0.36 -1.5
3,875,604 - ABIE40_RS19305 0.36 -1.7
3,875,605 + ABIE40_RS19305 0.36 -0.5
3,875,605 + ABIE40_RS19305 0.36 +0.4
3,875,606 - ABIE40_RS19305 0.36 -0.3
3,875,606 - ABIE40_RS19305 0.36 +0.8
3,875,620 + ABIE40_RS19305 0.37 +0.4
3,875,620 + ABIE40_RS19305 0.37 -0.2
3,875,988 + ABIE40_RS19305 0.76 +1.0
3,876,017 + ABIE40_RS19305 0.79 +0.1
3,876,133 + -2.8
3,876,133 + -0.0
3,876,134 - +0.8
3,876,146 + +0.3
3,876,147 - -0.7
3,876,149 + -0.3
3,876,150 - +0.6
3,876,248 - -1.0
3,876,274 + -1.7
3,876,274 + -0.0
3,876,274 + -0.5
3,876,274 + -1.3
3,876,274 + -2.2
3,876,274 + -1.3
3,876,275 - -0.9
3,876,275 - -1.3
3,876,275 - -0.8
3,876,275 - -1.8
3,876,275 - -2.5
3,876,548 + ABIE40_RS19310 0.28 -1.4
3,876,746 + ABIE40_RS19310 0.51 -0.6
3,876,746 + ABIE40_RS19310 0.51 -1.9
3,876,746 + ABIE40_RS19310 0.51 -1.7
3,876,747 - ABIE40_RS19310 0.51 -2.6
3,876,747 - ABIE40_RS19310 0.51 -0.5
3,876,962 + ABIE40_RS19310 0.77 -1.0
3,876,963 - ABIE40_RS19310 0.77 -2.7
3,876,986 + ABIE40_RS19310 0.80 -1.3
3,876,986 + ABIE40_RS19310 0.80 -1.4
3,876,986 + ABIE40_RS19310 0.80 +1.8
3,876,986 + ABIE40_RS19310 0.80 -1.1
3,877,077 - -3.5
3,877,234 + -0.6
3,877,238 + +0.0
3,877,238 + -1.3
3,877,239 - +0.2
3,877,239 - +0.1
3,877,239 - -0.5
3,877,246 + +1.8
3,877,265 - +1.1
3,877,366 + -0.2
3,877,375 + -0.4
3,877,375 + -0.7
3,877,375 + +0.4
3,877,375 + +0.4
3,877,375 + -0.2
3,877,376 - -0.2
3,877,376 - -0.1
3,877,376 - +1.0
3,877,376 - +0.8
3,877,376 - -2.4
3,877,702 + ABIE40_RS19315 0.27 -0.3
3,877,702 + ABIE40_RS19315 0.27 -1.5
3,877,702 + ABIE40_RS19315 0.27 -1.1
3,877,702 + ABIE40_RS19315 0.27 +1.2
3,877,703 - ABIE40_RS19315 0.27 +2.0
3,877,703 - ABIE40_RS19315 0.27 -0.0
3,877,753 - ABIE40_RS19315 0.31 +0.2
3,877,756 + ABIE40_RS19315 0.31 +0.0
3,877,756 + ABIE40_RS19315 0.31 +0.1
3,877,756 + ABIE40_RS19315 0.31 -1.7
3,877,756 + ABIE40_RS19315 0.31 -0.3
3,877,756 + ABIE40_RS19315 0.31 +0.9
3,877,757 - ABIE40_RS19315 0.31 -0.9
3,877,757 - ABIE40_RS19315 0.31 -0.4
3,877,822 + ABIE40_RS19315 0.36 +0.3
3,877,831 + ABIE40_RS19315 0.37 +1.2
3,877,832 - ABIE40_RS19315 0.37 +0.7
3,877,832 - ABIE40_RS19315 0.37 +1.0
3,877,832 - ABIE40_RS19315 0.37 +0.5
3,877,832 - ABIE40_RS19315 0.37 -1.4
3,878,028 + ABIE40_RS19315 0.53 +1.8
3,878,028 + ABIE40_RS19315 0.53 +0.3
3,878,029 - ABIE40_RS19315 0.53 -0.4

Or see this region's nucleotide sequence