Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS18850

Experiment: Formate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate (C)
3,777,254	+		ABIE40_RS18845	0.44	-2.7
3,777,254	+		ABIE40_RS18845	0.44	+0.2
3,777,254	+		ABIE40_RS18845	0.44	+0.5
3,777,254	+		ABIE40_RS18845	0.44	-4.1
3,777,254	+		ABIE40_RS18845	0.44	+0.1
3,777,254	+		ABIE40_RS18845	0.44	-0.6
3,777,254	+		ABIE40_RS18845	0.44	-0.7
3,777,255	-		ABIE40_RS18845	0.44	-0.1
3,777,255	-		ABIE40_RS18845	0.44	-1.2
3,777,257	+		ABIE40_RS18845	0.45	-2.7
3,777,257	+		ABIE40_RS18845	0.45	+1.6
3,777,257	+		ABIE40_RS18845	0.45	+0.8
3,777,257	+		ABIE40_RS18845	0.45	-2.7
3,777,258	-		ABIE40_RS18845	0.45	-0.0
3,777,258	-		ABIE40_RS18845	0.45	-1.5
3,777,258	-		ABIE40_RS18845	0.45	+0.4
3,777,258	-		ABIE40_RS18845	0.45	-1.7
3,777,258	-		ABIE40_RS18845	0.45	+1.1
3,777,258	-		ABIE40_RS18845	0.45	-2.5
3,777,258	-		ABIE40_RS18845	0.45	+0.5
3,777,258	-		ABIE40_RS18845	0.45	-0.2
3,777,399	-		ABIE40_RS18845	0.53	+0.4
3,777,399	-		ABIE40_RS18845	0.53	-0.4
3,777,404	+		ABIE40_RS18845	0.53	+1.6
3,777,404	+		ABIE40_RS18845	0.53	-0.5
3,777,405	-		ABIE40_RS18845	0.54	-0.3
3,777,405	-		ABIE40_RS18845	0.54	+0.1
3,777,405	-		ABIE40_RS18845	0.54	-1.2
3,777,405	-		ABIE40_RS18845	0.54	+1.0
3,777,440	+		ABIE40_RS18845	0.56	+0.4
3,777,440	+		ABIE40_RS18845	0.56	-1.0
3,777,440	+		ABIE40_RS18845	0.56	-0.8
3,777,441	-		ABIE40_RS18845	0.56	+0.5
3,777,441	-		ABIE40_RS18845	0.56	-1.2
3,777,441	-		ABIE40_RS18845	0.56	+1.8
3,777,441	-		ABIE40_RS18845	0.56	-2.2
3,777,441	-		ABIE40_RS18845	0.56	-0.2
3,777,555	+		ABIE40_RS18845	0.63	+0.7
3,777,555	+		ABIE40_RS18845	0.63	-0.7
3,777,555	+		ABIE40_RS18845	0.63	-1.3
3,777,555	+		ABIE40_RS18845	0.63	+0.8
3,777,555	+		ABIE40_RS18845	0.63	-0.5
3,777,556	-		ABIE40_RS18845	0.63	+2.2
3,777,556	-		ABIE40_RS18845	0.63	+0.8
3,777,556	-		ABIE40_RS18845	0.63	+0.5
3,777,556	-		ABIE40_RS18845	0.63	+3.0
3,777,556	-		ABIE40_RS18845	0.63	-0.8
3,777,556	-		ABIE40_RS18845	0.63	-0.5
3,777,667	-		ABIE40_RS18845	0.69	+0.3
3,777,667	-		ABIE40_RS18845	0.69	-0.9
3,777,667	-		ABIE40_RS18845	0.69	-0.5
3,777,682	+		ABIE40_RS18845	0.70	-0.9
3,777,871	+		ABIE40_RS18845	0.82	+0.1
3,777,872	-		ABIE40_RS18845	0.82	-0.9
3,777,872	-		ABIE40_RS18845	0.82	-0.5
3,777,872	-		ABIE40_RS18845	0.82	-0.3
3,777,873	+		ABIE40_RS18845	0.82	-0.5
3,777,873	+		ABIE40_RS18845	0.82	-1.1
3,777,874	-		ABIE40_RS18845	0.82	+1.8
3,777,966	+		ABIE40_RS18845	0.88	+0.1
3,777,967	-		ABIE40_RS18845	0.88	-3.2
3,777,967	-		ABIE40_RS18845	0.88	-0.8
3,777,967	-		ABIE40_RS18845	0.88	+2.3
3,777,967	-		ABIE40_RS18845	0.88	-2.1
3,777,967	-		ABIE40_RS18845	0.88	+0.5
3,778,060	+				-0.1
3,778,060	+				+0.3
3,778,197	+				-0.2
3,778,197	+				-0.4
3,778,197	+				-0.1
3,778,197	+				+0.8
3,778,197	+				-0.1
3,778,198	-				+0.9
3,778,218	+				+1.5
3,778,219	-				-0.2
3,778,299	+				+0.8
3,778,342	+		ABIE40_RS18850	0.12	+1.3
3,778,342	+		ABIE40_RS18850	0.12	-1.2
3,778,343	-		ABIE40_RS18850	0.12	+1.1
3,778,343	-		ABIE40_RS18850	0.12	-1.8
3,778,343	-		ABIE40_RS18850	0.12	+0.6
3,778,343	-		ABIE40_RS18850	0.12	-0.8
3,778,343	-		ABIE40_RS18850	0.12	-1.0
3,778,506	+		ABIE40_RS18850	0.27	+0.1
3,778,506	+		ABIE40_RS18850	0.27	-0.2
3,778,506	+		ABIE40_RS18850	0.27	-1.9
3,778,506	+		ABIE40_RS18850	0.27	+0.1
3,778,507	-		ABIE40_RS18850	0.27	-0.2
3,778,507	-		ABIE40_RS18850	0.27	+0.9
3,778,507	-		ABIE40_RS18850	0.27	+0.1
3,778,507	-		ABIE40_RS18850	0.27	+1.1
3,778,661	-		ABIE40_RS18850	0.42	-0.1
3,778,888	+		ABIE40_RS18850	0.63	+0.2
3,778,888	+		ABIE40_RS18850	0.63	+0.9
3,778,889	-		ABIE40_RS18850	0.63	-0.0
3,778,889	-		ABIE40_RS18850	0.63	+1.8
3,778,889	-		ABIE40_RS18850	0.63	+0.3
3,778,889	-		ABIE40_RS18850	0.63	+0.7
3,778,889	-		ABIE40_RS18850	0.63	-1.2
3,779,109	+		ABIE40_RS18850	0.84	-0.6
3,779,109	+		ABIE40_RS18850	0.84	-0.7
3,779,109	+		ABIE40_RS18850	0.84	+1.6
3,779,109	+		ABIE40_RS18850	0.84	+1.6
3,779,109	+		ABIE40_RS18850	0.84	+0.6
3,779,109	+		ABIE40_RS18850	0.84	+0.4
3,779,109	+		ABIE40_RS18850	0.84	-0.2
3,779,109	+		ABIE40_RS18850	0.84	-0.0
3,779,109	+		ABIE40_RS18850	0.84	-1.6
3,779,109	+		ABIE40_RS18850	0.84	+0.8
3,779,109	+		ABIE40_RS18850	0.84	-0.0
3,779,109	+		ABIE40_RS18850	0.84	-2.3
3,779,109	+		ABIE40_RS18850	0.84	+0.8
3,779,109	+		ABIE40_RS18850	0.84	-1.1
3,779,110	-		ABIE40_RS18850	0.84	-1.2
3,779,110	-		ABIE40_RS18850	0.84	+0.9
3,779,110	-		ABIE40_RS18850	0.84	-0.1
3,779,110	-		ABIE40_RS18850	0.84	-0.3
3,779,110	-		ABIE40_RS18850	0.84	-2.4
3,779,110	-		ABIE40_RS18850	0.84	+0.0
3,779,110	-		ABIE40_RS18850	0.84	-1.2
3,779,164	+		ABIE40_RS18850	0.89	+0.7
3,779,262	-				+0.2
3,779,307	-				-1.1
3,779,322	+				-0.5
3,779,322	+				-2.6
3,779,322	+				+0.4
3,779,322	+				-1.8
3,779,322	+				-0.7
3,779,323	-				-0.8
3,779,323	-				-0.2
3,779,323	-				+0.2
3,779,323	-				-2.0
3,779,340	-				+0.5
3,779,356	+				-0.7
3,779,433	+				+0.5
3,779,460	+				-1.2
3,779,460	+				-0.4
3,779,461	-				-0.7
3,779,514	+				+0.4
3,779,514	+				-0.8
3,779,517	+				-1.0
3,779,517	+				-0.3
3,779,517	+				+0.9
3,779,517	+				-1.3
3,779,658	+		ABIE40_RS18855	0.22	+0.2
3,779,659	-		ABIE40_RS18855	0.22	-0.2
3,779,659	-		ABIE40_RS18855	0.22	-1.3
3,779,746	-		ABIE40_RS18855	0.31	-2.1
3,779,771	-		ABIE40_RS18855	0.33	+0.6
3,779,815	+		ABIE40_RS18855	0.37	-0.2
3,779,817	+		ABIE40_RS18855	0.38	-0.9
3,779,817	+		ABIE40_RS18855	0.38	+0.2
3,779,818	-		ABIE40_RS18855	0.38	+0.2
3,779,818	-		ABIE40_RS18855	0.38	-2.1
3,779,818	-		ABIE40_RS18855	0.38	+0.3
3,779,818	-		ABIE40_RS18855	0.38	+0.1
3,779,841	+		ABIE40_RS18855	0.40	-0.3
3,779,842	-		ABIE40_RS18855	0.40	-1.2
3,779,842	-		ABIE40_RS18855	0.40	-0.0
3,779,958	+		ABIE40_RS18855	0.51	-0.6
3,779,958	+		ABIE40_RS18855	0.51	-1.3
3,779,958	+		ABIE40_RS18855	0.51	+0.6
3,779,958	+		ABIE40_RS18855	0.51	-0.4
3,779,958	+		ABIE40_RS18855	0.51	+0.5
3,779,959	-		ABIE40_RS18855	0.51	-0.4
3,779,959	-		ABIE40_RS18855	0.51	-0.5
3,779,959	-		ABIE40_RS18855	0.51	-0.4
3,779,959	-		ABIE40_RS18855	0.51	-0.9
3,780,049	+		ABIE40_RS18855	0.60	-0.2
3,780,049	+		ABIE40_RS18855	0.60	-0.4
3,780,049	+		ABIE40_RS18855	0.60	-0.9
3,780,049	+		ABIE40_RS18855	0.60	+1.1
3,780,050	-		ABIE40_RS18855	0.60	-1.5
3,780,050	-		ABIE40_RS18855	0.60	+0.7
3,780,050	-		ABIE40_RS18855	0.60	-1.0
3,780,051	+		ABIE40_RS18855	0.60	+1.7
3,780,051	+		ABIE40_RS18855	0.60	-2.2
3,780,052	-		ABIE40_RS18855	0.60	+1.0
3,780,123	+		ABIE40_RS18855	0.67	+0.1
3,780,123	+		ABIE40_RS18855	0.67	+0.0
3,780,123	+		ABIE40_RS18855	0.67	-1.4
3,780,123	+		ABIE40_RS18855	0.67	-0.7
3,780,124	-		ABIE40_RS18855	0.67	-0.3
3,780,211	+		ABIE40_RS18855	0.76	-2.2
3,780,212	-		ABIE40_RS18855	0.76	-0.5