Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09145

Experiment: Formate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS09140 and ABIE40_RS09145 are separated by 2 nucleotidesABIE40_RS09145 and ABIE40_RS09150 are separated by 8 nucleotides ABIE40_RS09140: ABIE40_RS09140 - siroheme synthase CysG, at 1,761,203 to 1,762,639 _RS09140 ABIE40_RS09145: ABIE40_RS09145 - DUF2849 domain-containing protein, at 1,762,642 to 1,762,956 _RS09145 ABIE40_RS09150: ABIE40_RS09150 - nitrite/sulfite reductase, at 1,762,965 to 1,764,635 _RS09150 Position (kb) 1762 1763Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1761.705 kb on - strand, within ABIE40_RS09140at 1761.871 kb on + strand, within ABIE40_RS09140at 1761.871 kb on + strand, within ABIE40_RS09140at 1761.871 kb on + strand, within ABIE40_RS09140at 1761.871 kb on + strand, within ABIE40_RS09140at 1762.117 kb on + strand, within ABIE40_RS09140at 1762.117 kb on + strand, within ABIE40_RS09140at 1762.118 kb on - strand, within ABIE40_RS09140at 1762.139 kb on + strand, within ABIE40_RS09140at 1762.139 kb on + strand, within ABIE40_RS09140at 1762.139 kb on + strand, within ABIE40_RS09140at 1762.189 kb on + strand, within ABIE40_RS09140at 1762.190 kb on + strand, within ABIE40_RS09140at 1762.191 kb on - strand, within ABIE40_RS09140at 1762.191 kb on - strand, within ABIE40_RS09140at 1762.191 kb on - strand, within ABIE40_RS09140at 1762.364 kb on + strand, within ABIE40_RS09140at 1762.364 kb on + strand, within ABIE40_RS09140at 1762.364 kb on + strand, within ABIE40_RS09140at 1762.364 kb on + strand, within ABIE40_RS09140at 1762.364 kb on + strand, within ABIE40_RS09140at 1762.364 kb on + strand, within ABIE40_RS09140at 1762.365 kb on - strand, within ABIE40_RS09140at 1762.365 kb on - strand, within ABIE40_RS09140at 1762.365 kb on - strand, within ABIE40_RS09140at 1762.365 kb on - strand, within ABIE40_RS09140at 1762.365 kb on - strand, within ABIE40_RS09140at 1762.366 kb on + strand, within ABIE40_RS09140at 1762.419 kb on + strand, within ABIE40_RS09140at 1762.420 kb on - strand, within ABIE40_RS09140at 1762.646 kb on + strandat 1762.646 kb on + strandat 1762.647 kb on - strandat 1762.647 kb on - strandat 1762.647 kb on - strandat 1762.655 kb on + strandat 1762.795 kb on + strand, within ABIE40_RS09145at 1762.796 kb on - strand, within ABIE40_RS09145at 1762.796 kb on - strand, within ABIE40_RS09145at 1762.796 kb on - strand, within ABIE40_RS09145at 1762.853 kb on + strand, within ABIE40_RS09145at 1762.853 kb on + strand, within ABIE40_RS09145at 1762.854 kb on - strand, within ABIE40_RS09145at 1762.854 kb on - strand, within ABIE40_RS09145at 1762.854 kb on - strand, within ABIE40_RS09145at 1762.909 kb on + strand, within ABIE40_RS09145at 1762.909 kb on + strand, within ABIE40_RS09145at 1762.909 kb on + strand, within ABIE40_RS09145at 1762.909 kb on + strand, within ABIE40_RS09145at 1762.909 kb on + strand, within ABIE40_RS09145at 1762.909 kb on + strand, within ABIE40_RS09145at 1762.909 kb on + strand, within ABIE40_RS09145at 1762.909 kb on + strand, within ABIE40_RS09145at 1762.910 kb on - strand, within ABIE40_RS09145at 1762.910 kb on - strand, within ABIE40_RS09145at 1762.910 kb on - strand, within ABIE40_RS09145at 1762.968 kb on + strandat 1762.968 kb on + strandat 1762.968 kb on + strandat 1762.969 kb on - strandat 1762.969 kb on - strandat 1763.100 kb on + strandat 1763.118 kb on + strandat 1763.118 kb on + strandat 1763.118 kb on + strandat 1763.118 kb on + strandat 1763.118 kb on + strandat 1763.118 kb on + strandat 1763.118 kb on + strandat 1763.118 kb on + strandat 1763.119 kb on - strandat 1763.119 kb on - strandat 1763.119 kb on - strandat 1763.119 kb on - strandat 1763.119 kb on - strandat 1763.142 kb on + strand, within ABIE40_RS09150at 1763.196 kb on + strand, within ABIE40_RS09150at 1763.196 kb on + strand, within ABIE40_RS09150at 1763.196 kb on + strand, within ABIE40_RS09150at 1763.196 kb on + strand, within ABIE40_RS09150at 1763.196 kb on + strand, within ABIE40_RS09150at 1763.196 kb on + strand, within ABIE40_RS09150at 1763.197 kb on - strand, within ABIE40_RS09150at 1763.197 kb on - strand, within ABIE40_RS09150at 1763.397 kb on + strand, within ABIE40_RS09150at 1763.397 kb on + strand, within ABIE40_RS09150at 1763.397 kb on + strand, within ABIE40_RS09150at 1763.398 kb on - strand, within ABIE40_RS09150at 1763.531 kb on + strand, within ABIE40_RS09150at 1763.543 kb on + strand, within ABIE40_RS09150at 1763.569 kb on - strand, within ABIE40_RS09150at 1763.569 kb on - strand, within ABIE40_RS09150at 1763.673 kb on + strand, within ABIE40_RS09150at 1763.674 kb on - strand, within ABIE40_RS09150at 1763.674 kb on - strand, within ABIE40_RS09150at 1763.674 kb on - strand, within ABIE40_RS09150at 1763.680 kb on + strand, within ABIE40_RS09150at 1763.681 kb on - strand, within ABIE40_RS09150at 1763.699 kb on + strand, within ABIE40_RS09150at 1763.699 kb on + strand, within ABIE40_RS09150at 1763.700 kb on - strand, within ABIE40_RS09150at 1763.700 kb on - strand, within ABIE40_RS09150at 1763.700 kb on - strand, within ABIE40_RS09150at 1763.700 kb on - strand, within ABIE40_RS09150at 1763.700 kb on - strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.703 kb on + strand, within ABIE40_RS09150at 1763.704 kb on - strand, within ABIE40_RS09150at 1763.704 kb on - strand, within ABIE40_RS09150

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate (C)
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1,761,705 - ABIE40_RS09140 0.35 -3.6
1,761,871 + ABIE40_RS09140 0.46 -1.0
1,761,871 + ABIE40_RS09140 0.46 -5.0
1,761,871 + ABIE40_RS09140 0.46 -2.2
1,761,871 + ABIE40_RS09140 0.46 -4.2
1,762,117 + ABIE40_RS09140 0.64 -2.8
1,762,117 + ABIE40_RS09140 0.64 -3.1
1,762,118 - ABIE40_RS09140 0.64 -0.6
1,762,139 + ABIE40_RS09140 0.65 -3.3
1,762,139 + ABIE40_RS09140 0.65 -3.3
1,762,139 + ABIE40_RS09140 0.65 -2.5
1,762,189 + ABIE40_RS09140 0.69 -3.4
1,762,190 + ABIE40_RS09140 0.69 -2.3
1,762,191 - ABIE40_RS09140 0.69 -4.4
1,762,191 - ABIE40_RS09140 0.69 -4.6
1,762,191 - ABIE40_RS09140 0.69 -2.3
1,762,364 + ABIE40_RS09140 0.81 -1.3
1,762,364 + ABIE40_RS09140 0.81 -1.9
1,762,364 + ABIE40_RS09140 0.81 -1.2
1,762,364 + ABIE40_RS09140 0.81 -2.6
1,762,364 + ABIE40_RS09140 0.81 -1.5
1,762,364 + ABIE40_RS09140 0.81 -4.6
1,762,365 - ABIE40_RS09140 0.81 -3.9
1,762,365 - ABIE40_RS09140 0.81 -2.8
1,762,365 - ABIE40_RS09140 0.81 -3.4
1,762,365 - ABIE40_RS09140 0.81 -1.4
1,762,365 - ABIE40_RS09140 0.81 -3.3
1,762,366 + ABIE40_RS09140 0.81 -1.3
1,762,419 + ABIE40_RS09140 0.85 -0.9
1,762,420 - ABIE40_RS09140 0.85 -3.8
1,762,646 + -1.9
1,762,646 + -1.3
1,762,647 - -2.2
1,762,647 - -2.0
1,762,647 - +0.4
1,762,655 + +0.0
1,762,795 + ABIE40_RS09145 0.49 -5.4
1,762,796 - ABIE40_RS09145 0.49 -2.8
1,762,796 - ABIE40_RS09145 0.49 -2.3
1,762,796 - ABIE40_RS09145 0.49 -0.6
1,762,853 + ABIE40_RS09145 0.67 -1.8
1,762,853 + ABIE40_RS09145 0.67 -2.9
1,762,854 - ABIE40_RS09145 0.67 -5.4
1,762,854 - ABIE40_RS09145 0.67 -3.0
1,762,854 - ABIE40_RS09145 0.67 -2.4
1,762,909 + ABIE40_RS09145 0.85 -2.7
1,762,909 + ABIE40_RS09145 0.85 -1.4
1,762,909 + ABIE40_RS09145 0.85 -2.8
1,762,909 + ABIE40_RS09145 0.85 +0.1
1,762,909 + ABIE40_RS09145 0.85 +0.2
1,762,909 + ABIE40_RS09145 0.85 -0.7
1,762,909 + ABIE40_RS09145 0.85 +0.0
1,762,909 + ABIE40_RS09145 0.85 -0.6
1,762,910 - ABIE40_RS09145 0.85 -3.2
1,762,910 - ABIE40_RS09145 0.85 -2.3
1,762,910 - ABIE40_RS09145 0.85 -2.2
1,762,968 + -5.4
1,762,968 + -2.6
1,762,968 + -3.2
1,762,969 - -4.0
1,762,969 - -1.3
1,763,100 + -3.8
1,763,118 + -1.4
1,763,118 + -2.7
1,763,118 + -4.5
1,763,118 + -1.8
1,763,118 + -4.8
1,763,118 + -3.5
1,763,118 + -1.9
1,763,118 + -2.8
1,763,119 - -2.6
1,763,119 - -2.8
1,763,119 - -4.8
1,763,119 - -4.8
1,763,119 - -2.6
1,763,142 + ABIE40_RS09150 0.11 +0.4
1,763,196 + ABIE40_RS09150 0.14 -5.2
1,763,196 + ABIE40_RS09150 0.14 -2.7
1,763,196 + ABIE40_RS09150 0.14 -4.4
1,763,196 + ABIE40_RS09150 0.14 -2.2
1,763,196 + ABIE40_RS09150 0.14 -2.0
1,763,196 + ABIE40_RS09150 0.14 -3.3
1,763,197 - ABIE40_RS09150 0.14 -2.6
1,763,197 - ABIE40_RS09150 0.14 -5.4
1,763,397 + ABIE40_RS09150 0.26 -3.2
1,763,397 + ABIE40_RS09150 0.26 -5.4
1,763,397 + ABIE40_RS09150 0.26 -4.6
1,763,398 - ABIE40_RS09150 0.26 -3.3
1,763,531 + ABIE40_RS09150 0.34 -4.1
1,763,543 + ABIE40_RS09150 0.35 -4.8
1,763,569 - ABIE40_RS09150 0.36 -4.1
1,763,569 - ABIE40_RS09150 0.36 -4.9
1,763,673 + ABIE40_RS09150 0.42 -4.8
1,763,674 - ABIE40_RS09150 0.42 -4.5
1,763,674 - ABIE40_RS09150 0.42 -2.3
1,763,674 - ABIE40_RS09150 0.42 -4.2
1,763,680 + ABIE40_RS09150 0.43 -4.7
1,763,681 - ABIE40_RS09150 0.43 -3.5
1,763,699 + ABIE40_RS09150 0.44 -5.0
1,763,699 + ABIE40_RS09150 0.44 -2.1
1,763,700 - ABIE40_RS09150 0.44 -5.0
1,763,700 - ABIE40_RS09150 0.44 -3.2
1,763,700 - ABIE40_RS09150 0.44 -3.7
1,763,700 - ABIE40_RS09150 0.44 -1.8
1,763,700 - ABIE40_RS09150 0.44 -2.0
1,763,703 + ABIE40_RS09150 0.44 -2.6
1,763,703 + ABIE40_RS09150 0.44 -4.4
1,763,703 + ABIE40_RS09150 0.44 -2.6
1,763,703 + ABIE40_RS09150 0.44 -2.3
1,763,703 + ABIE40_RS09150 0.44 -5.3
1,763,703 + ABIE40_RS09150 0.44 -2.8
1,763,703 + ABIE40_RS09150 0.44 -4.1
1,763,703 + ABIE40_RS09150 0.44 -5.0
1,763,703 + ABIE40_RS09150 0.44 -4.2
1,763,703 + ABIE40_RS09150 0.44 -3.4
1,763,704 - ABIE40_RS09150 0.44 -2.0
1,763,704 - ABIE40_RS09150 0.44 -2.9

Or see this region's nucleotide sequence