Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05685

Experiment: Formate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate (C)
1,111,282	-		ABIE40_RS05675	0.60	-0.8
1,111,397	+		ABIE40_RS05675	0.70	-0.0
1,111,397	+		ABIE40_RS05675	0.70	+0.1
1,111,397	+		ABIE40_RS05675	0.70	-0.6
1,111,398	-		ABIE40_RS05675	0.70	-1.8
1,111,531	+		ABIE40_RS05675	0.82	+0.5
1,111,531	+		ABIE40_RS05675	0.82	-0.3
1,111,531	+		ABIE40_RS05675	0.82	-0.0
1,111,531	+		ABIE40_RS05675	0.82	-1.9
1,111,531	+		ABIE40_RS05675	0.82	+1.4
1,111,531	+		ABIE40_RS05675	0.82	+0.9
1,111,532	-		ABIE40_RS05675	0.82	-2.1
1,111,532	-		ABIE40_RS05675	0.82	+0.0
1,111,594	-		ABIE40_RS05675	0.87	+0.6
1,111,594	-		ABIE40_RS05675	0.87	-2.2
1,111,594	-		ABIE40_RS05675	0.87	-1.1
1,111,600	+		ABIE40_RS05675	0.88	-1.8
1,111,601	-		ABIE40_RS05675	0.88	-2.3
1,111,601	-		ABIE40_RS05675	0.88	-0.9
1,111,710	-				-2.5
1,111,783	+		ABIE40_RS05680	0.11	+1.4
1,111,784	-		ABIE40_RS05680	0.11	-0.9
1,111,841	+		ABIE40_RS05680	0.24	-3.6
1,111,841	+		ABIE40_RS05680	0.24	-1.6
1,111,842	-		ABIE40_RS05680	0.24	-2.7
1,111,994	+		ABIE40_RS05680	0.58	-1.9
1,111,994	+		ABIE40_RS05680	0.58	-0.6
1,111,994	+		ABIE40_RS05680	0.58	-0.3
1,111,994	+		ABIE40_RS05680	0.58	-1.5
1,111,994	+		ABIE40_RS05680	0.58	-1.6
1,111,996	+		ABIE40_RS05680	0.58	-1.3
1,111,996	+		ABIE40_RS05680	0.58	-2.6
1,111,997	-		ABIE40_RS05680	0.58	-3.3
1,112,114	+		ABIE40_RS05680	0.84	-1.0
1,112,114	+		ABIE40_RS05680	0.84	-2.6
1,112,114	+		ABIE40_RS05680	0.84	-1.9
1,112,114	+		ABIE40_RS05680	0.84	-1.7
1,112,115	-		ABIE40_RS05680	0.84	-2.2
1,112,204	-				-2.8
1,112,356	+				-1.8
1,112,356	+				-3.1
1,112,356	+				-4.5
1,112,357	-				-2.4
1,112,357	-				-1.3
1,112,357	-				-3.7
1,112,357	-				-0.7
1,112,357	-				-2.7
1,112,428	+		ABIE40_RS05685	0.12	-0.0
1,112,429	-		ABIE40_RS05685	0.12	-0.0
1,112,429	-		ABIE40_RS05685	0.12	-1.8
1,112,435	-		ABIE40_RS05685	0.13	-0.5
1,112,669	+		ABIE40_RS05685	0.24	-2.8
1,112,680	-		ABIE40_RS05685	0.25	-1.8
1,112,710	+		ABIE40_RS05685	0.26	-0.9
1,112,711	-		ABIE40_RS05685	0.26	-0.5
1,112,711	-		ABIE40_RS05685	0.26	-0.8
1,112,711	-		ABIE40_RS05685	0.26	-1.6
1,112,720	-		ABIE40_RS05685	0.27	-2.7
1,112,720	-		ABIE40_RS05685	0.27	-1.6
1,112,861	-		ABIE40_RS05685	0.34	-0.9
1,112,861	-		ABIE40_RS05685	0.34	-2.5
1,112,869	+		ABIE40_RS05685	0.34	-0.1
1,112,869	+		ABIE40_RS05685	0.34	-1.4
1,112,870	-		ABIE40_RS05685	0.34	+0.2
1,112,872	+		ABIE40_RS05685	0.35	-1.0
1,112,872	+		ABIE40_RS05685	0.35	-0.3
1,112,872	+		ABIE40_RS05685	0.35	-0.9
1,112,873	-		ABIE40_RS05685	0.35	-2.3
1,113,286	-		ABIE40_RS05685	0.55	-3.1
1,113,457	+		ABIE40_RS05685	0.64	-0.4
1,113,457	+		ABIE40_RS05685	0.64	-2.2
1,113,458	-		ABIE40_RS05685	0.64	-0.1
1,113,458	-		ABIE40_RS05685	0.64	-2.9
1,113,458	-		ABIE40_RS05685	0.64	-2.8
1,113,502	+		ABIE40_RS05685	0.66	+1.4
1,113,502	+		ABIE40_RS05685	0.66	-1.6
1,113,502	+		ABIE40_RS05685	0.66	-3.2
1,113,502	+		ABIE40_RS05685	0.66	-4.0
1,113,502	+		ABIE40_RS05685	0.66	-2.9
1,113,503	-		ABIE40_RS05685	0.66	-2.0
1,113,503	-		ABIE40_RS05685	0.66	-2.4
1,113,503	-		ABIE40_RS05685	0.66	-2.2
1,113,503	-		ABIE40_RS05685	0.66	-1.3
1,113,503	-		ABIE40_RS05685	0.66	+0.0
1,113,505	-		ABIE40_RS05685	0.66	+0.4
1,113,829	+		ABIE40_RS05685	0.82	-1.2
1,113,829	+		ABIE40_RS05685	0.82	-3.3
1,113,830	-		ABIE40_RS05685	0.82	-2.7
1,113,830	-		ABIE40_RS05685	0.82	-1.8
1,113,907	+		ABIE40_RS05685	0.86	-0.9
1,113,907	+		ABIE40_RS05685	0.86	+1.1
1,113,907	+		ABIE40_RS05685	0.86	-1.9
1,113,907	+		ABIE40_RS05685	0.86	-2.1
1,113,907	+		ABIE40_RS05685	0.86	-1.8
1,113,907	+		ABIE40_RS05685	0.86	-0.9
1,113,908	-		ABIE40_RS05685	0.86	+0.3
1,113,970	+		ABIE40_RS05685	0.89	-3.6
1,113,970	+		ABIE40_RS05685	0.89	-2.1
1,113,970	+		ABIE40_RS05685	0.89	-1.6
1,113,971	-		ABIE40_RS05685	0.90	-3.1
1,113,971	-		ABIE40_RS05685	0.90	-3.5
1,113,971	-		ABIE40_RS05685	0.90	-0.2
1,113,971	-		ABIE40_RS05685	0.90	-2.7
1,114,331	+				-1.2
1,114,331	+				+0.8
1,114,332	-				-2.4
1,114,420	+		ABIE40_RS05690	0.14	+1.0
1,114,421	-		ABIE40_RS05690	0.14	-2.7
1,114,608	+		ABIE40_RS05690	0.54	-0.3
1,114,608	+		ABIE40_RS05690	0.54	-1.3
1,114,608	+		ABIE40_RS05690	0.54	-3.2
1,114,609	-		ABIE40_RS05690	0.54	-0.2
1,114,609	-		ABIE40_RS05690	0.54	-4.5
1,114,609	-		ABIE40_RS05690	0.54	-1.8
1,114,609	-		ABIE40_RS05690	0.54	-1.8
1,114,623	+		ABIE40_RS05690	0.57	-0.2
1,114,769	+		ABIE40_RS05690	0.88	-1.9
1,114,780	-				+1.4
1,114,874	-				-0.2
1,114,921	-				+0.5
1,114,935	+				-3.4
1,114,935	+				+0.8
1,114,935	+				+0.3
1,114,936	-				+0.4
1,114,937	+				-0.3
1,114,937	+				+0.3
1,114,937	+				+1.8
1,114,937	+				+0.1
1,114,937	+				-3.2
1,114,938	-				-0.5
1,114,938	-				-0.5
1,114,938	-				-1.6
1,114,980	+				-0.9
1,115,002	+				+0.9
1,115,004	+				-0.2
1,115,004	+				-1.8
1,115,005	-				+0.8
1,115,005	-				-1.8
1,115,005	-				-2.2
1,115,111	+				-1.8
1,115,111	+				-0.4