Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04060 and ABIE40_RS04065 are separated by 20 nucleotides ABIE40_RS04065 and ABIE40_RS04070 are separated by 147 nucleotides
ABIE40_RS04060: ABIE40_RS04060 - cytochrome c oxidase subunit II, at 805,504 to 806,394
_RS04060
ABIE40_RS04065: ABIE40_RS04065 - cytochrome c oxidase subunit I, at 806,415 to 808,112
_RS04065
ABIE40_RS04070: ABIE40_RS04070 - heme o synthase, at 808,260 to 809,216
_RS04070
Position (kb) 806
807
808
809 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 805.497 kb on + strand at 805.500 kb on + strand at 805.500 kb on + strand at 805.500 kb on + strand at 805.500 kb on + strand at 805.500 kb on + strand at 805.501 kb on - strand at 805.509 kb on + strand at 805.509 kb on + strand at 805.519 kb on + strand at 805.519 kb on + strand at 805.519 kb on + strand at 805.520 kb on - strand at 805.520 kb on - strand at 805.567 kb on + strand at 805.567 kb on + strand at 805.567 kb on + strand at 805.567 kb on + strand at 805.567 kb on + strand at 805.567 kb on + strand at 805.567 kb on + strand at 805.651 kb on + strand, within ABIE40_RS04060 at 805.652 kb on - strand, within ABIE40_RS04060 at 805.652 kb on - strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.653 kb on + strand, within ABIE40_RS04060 at 805.654 kb on - strand, within ABIE40_RS04060 at 805.654 kb on - strand, within ABIE40_RS04060 at 805.654 kb on - strand, within ABIE40_RS04060 at 805.654 kb on - strand, within ABIE40_RS04060 at 805.654 kb on - strand, within ABIE40_RS04060 at 805.654 kb on - strand, within ABIE40_RS04060 at 805.761 kb on + strand, within ABIE40_RS04060 at 805.761 kb on + strand, within ABIE40_RS04060 at 805.915 kb on + strand, within ABIE40_RS04060 at 805.915 kb on + strand, within ABIE40_RS04060 at 805.922 kb on - strand, within ABIE40_RS04060 at 805.922 kb on - strand, within ABIE40_RS04060 at 805.922 kb on - strand, within ABIE40_RS04060 at 805.922 kb on - strand, within ABIE40_RS04060 at 805.922 kb on - strand, within ABIE40_RS04060 at 805.960 kb on + strand, within ABIE40_RS04060 at 805.960 kb on + strand, within ABIE40_RS04060 at 805.960 kb on + strand, within ABIE40_RS04060 at 806.014 kb on + strand, within ABIE40_RS04060 at 806.204 kb on - strand, within ABIE40_RS04060 at 806.281 kb on + strand, within ABIE40_RS04060 at 806.281 kb on + strand, within ABIE40_RS04060 at 806.281 kb on + strand, within ABIE40_RS04060 at 806.281 kb on + strand, within ABIE40_RS04060 at 806.281 kb on + strand, within ABIE40_RS04060 at 806.282 kb on - strand, within ABIE40_RS04060 at 806.326 kb on + strand at 806.326 kb on + strand at 806.327 kb on - strand at 806.327 kb on - strand at 806.393 kb on - strand at 806.393 kb on - strand at 806.398 kb on - strand at 806.559 kb on + strand at 806.559 kb on + strand at 806.559 kb on + strand at 806.909 kb on - strand, within ABIE40_RS04065 at 806.958 kb on + strand, within ABIE40_RS04065 at 806.959 kb on - strand, within ABIE40_RS04065 at 807.154 kb on + strand, within ABIE40_RS04065 at 807.154 kb on + strand, within ABIE40_RS04065 at 807.261 kb on + strand, within ABIE40_RS04065 at 807.261 kb on + strand, within ABIE40_RS04065 at 807.261 kb on + strand, within ABIE40_RS04065 at 807.300 kb on + strand, within ABIE40_RS04065 at 807.300 kb on + strand, within ABIE40_RS04065 at 807.301 kb on - strand, within ABIE40_RS04065 at 807.301 kb on - strand, within ABIE40_RS04065 at 807.375 kb on + strand, within ABIE40_RS04065 at 807.390 kb on + strand, within ABIE40_RS04065 at 807.390 kb on + strand, within ABIE40_RS04065 at 807.390 kb on + strand, within ABIE40_RS04065 at 807.391 kb on - strand, within ABIE40_RS04065 at 807.400 kb on + strand, within ABIE40_RS04065 at 807.444 kb on + strand, within ABIE40_RS04065 at 807.444 kb on + strand, within ABIE40_RS04065 at 807.444 kb on + strand, within ABIE40_RS04065 at 807.444 kb on + strand, within ABIE40_RS04065 at 807.445 kb on - strand, within ABIE40_RS04065 at 807.445 kb on - strand, within ABIE40_RS04065 at 807.477 kb on + strand, within ABIE40_RS04065 at 807.478 kb on - strand, within ABIE40_RS04065 at 807.478 kb on - strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.679 kb on - strand, within ABIE40_RS04065 at 807.679 kb on - strand, within ABIE40_RS04065 at 807.679 kb on - strand, within ABIE40_RS04065 at 807.681 kb on + strand, within ABIE40_RS04065 at 807.702 kb on + strand, within ABIE40_RS04065 at 807.702 kb on + strand, within ABIE40_RS04065 at 807.750 kb on + strand, within ABIE40_RS04065 at 807.751 kb on - strand, within ABIE40_RS04065 at 807.751 kb on - strand, within ABIE40_RS04065 at 807.774 kb on + strand, within ABIE40_RS04065 at 807.774 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.781 kb on - strand, within ABIE40_RS04065 at 807.781 kb on - strand, within ABIE40_RS04065 at 807.886 kb on - strand, within ABIE40_RS04065 at 807.886 kb on - strand, within ABIE40_RS04065 at 807.894 kb on + strand, within ABIE40_RS04065 at 807.921 kb on + strand, within ABIE40_RS04065 at 807.921 kb on + strand, within ABIE40_RS04065 at 807.922 kb on - strand, within ABIE40_RS04065 at 807.922 kb on - strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.975 kb on + strand at 807.975 kb on + strand at 807.975 kb on + strand at 808.078 kb on - strand at 808.078 kb on - strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.111 kb on - strand at 808.111 kb on - strand at 808.258 kb on + strand at 808.258 kb on + strand at 808.259 kb on - strand at 808.259 kb on - strand at 808.336 kb on - strand at 808.494 kb on + strand, within ABIE40_RS04070 at 808.494 kb on + strand, within ABIE40_RS04070 at 808.674 kb on + strand, within ABIE40_RS04070 at 808.687 kb on - strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.689 kb on - strand, within ABIE40_RS04070 at 808.689 kb on - strand, within ABIE40_RS04070 at 808.878 kb on + strand, within ABIE40_RS04070 at 808.950 kb on + strand, within ABIE40_RS04070 at 809.050 kb on + strand, within ABIE40_RS04070 at 809.051 kb on - strand, within ABIE40_RS04070 at 809.051 kb on - strand, within ABIE40_RS04070 at 809.051 kb on - strand, within ABIE40_RS04070
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 805,497 + -0.7 805,500 + -0.7 805,500 + -3.3 805,500 + +0.5 805,500 + -2.1 805,500 + +0.9 805,501 - -2.6 805,509 + -3.1 805,509 + -1.7 805,519 + -1.4 805,519 + -0.8 805,519 + -1.3 805,520 - -2.5 805,520 - -2.0 805,567 + -1.2 805,567 + -0.3 805,567 + -3.3 805,567 + -0.6 805,567 + +1.6 805,567 + -2.7 805,567 + -1.6 805,651 + ABIE40_RS04060 0.16 -1.5 805,652 - ABIE40_RS04060 0.17 -0.0 805,652 - ABIE40_RS04060 0.17 -1.2 805,653 + ABIE40_RS04060 0.17 -0.0 805,653 + ABIE40_RS04060 0.17 -2.7 805,653 + ABIE40_RS04060 0.17 -3.6 805,653 + ABIE40_RS04060 0.17 -2.4 805,653 + ABIE40_RS04060 0.17 -2.5 805,653 + ABIE40_RS04060 0.17 -2.8 805,653 + ABIE40_RS04060 0.17 -1.7 805,653 + ABIE40_RS04060 0.17 -2.1 805,653 + ABIE40_RS04060 0.17 -0.0 805,653 + ABIE40_RS04060 0.17 +0.7 805,653 + ABIE40_RS04060 0.17 -2.0 805,653 + ABIE40_RS04060 0.17 -0.6 805,653 + ABIE40_RS04060 0.17 -4.5 805,653 + ABIE40_RS04060 0.17 -3.5 805,653 + ABIE40_RS04060 0.17 -2.8 805,653 + ABIE40_RS04060 0.17 -1.9 805,653 + ABIE40_RS04060 0.17 -0.1 805,653 + ABIE40_RS04060 0.17 -0.7 805,653 + ABIE40_RS04060 0.17 -2.2 805,654 - ABIE40_RS04060 0.17 -0.7 805,654 - ABIE40_RS04060 0.17 -2.1 805,654 - ABIE40_RS04060 0.17 -0.0 805,654 - ABIE40_RS04060 0.17 -1.9 805,654 - ABIE40_RS04060 0.17 -1.4 805,654 - ABIE40_RS04060 0.17 -2.5 805,761 + ABIE40_RS04060 0.29 -4.2 805,761 + ABIE40_RS04060 0.29 -1.9 805,915 + ABIE40_RS04060 0.46 -2.2 805,915 + ABIE40_RS04060 0.46 -1.1 805,922 - ABIE40_RS04060 0.47 -1.2 805,922 - ABIE40_RS04060 0.47 -3.0 805,922 - ABIE40_RS04060 0.47 -0.5 805,922 - ABIE40_RS04060 0.47 -2.3 805,922 - ABIE40_RS04060 0.47 -2.0 805,960 + ABIE40_RS04060 0.51 -0.3 805,960 + ABIE40_RS04060 0.51 -0.6 805,960 + ABIE40_RS04060 0.51 -1.1 806,014 + ABIE40_RS04060 0.57 -1.7 806,204 - ABIE40_RS04060 0.79 -2.2 806,281 + ABIE40_RS04060 0.87 -1.3 806,281 + ABIE40_RS04060 0.87 -1.0 806,281 + ABIE40_RS04060 0.87 -2.1 806,281 + ABIE40_RS04060 0.87 -2.5 806,281 + ABIE40_RS04060 0.87 -3.5 806,282 - ABIE40_RS04060 0.87 -2.4 806,326 + -1.6 806,326 + -2.2 806,327 - -2.7 806,327 - -2.9 806,393 - -1.4 806,393 - -3.3 806,398 - -0.5 806,559 + -2.0 806,559 + -2.7 806,559 + -1.6 806,909 - ABIE40_RS04065 0.29 -3.1 806,958 + ABIE40_RS04065 0.32 -2.3 806,959 - ABIE40_RS04065 0.32 -0.3 807,154 + ABIE40_RS04065 0.44 +0.1 807,154 + ABIE40_RS04065 0.44 -2.9 807,261 + ABIE40_RS04065 0.50 -3.6 807,261 + ABIE40_RS04065 0.50 -1.4 807,261 + ABIE40_RS04065 0.50 -2.0 807,300 + ABIE40_RS04065 0.52 -2.0 807,300 + ABIE40_RS04065 0.52 -3.0 807,301 - ABIE40_RS04065 0.52 -1.7 807,301 - ABIE40_RS04065 0.52 -0.4 807,375 + ABIE40_RS04065 0.57 -1.6 807,390 + ABIE40_RS04065 0.57 -2.2 807,390 + ABIE40_RS04065 0.57 -0.8 807,390 + ABIE40_RS04065 0.57 -2.1 807,391 - ABIE40_RS04065 0.57 +1.3 807,400 + ABIE40_RS04065 0.58 -1.2 807,444 + ABIE40_RS04065 0.61 -1.1 807,444 + ABIE40_RS04065 0.61 -4.0 807,444 + ABIE40_RS04065 0.61 -0.4 807,444 + ABIE40_RS04065 0.61 -0.6 807,445 - ABIE40_RS04065 0.61 +0.1 807,445 - ABIE40_RS04065 0.61 +0.6 807,477 + ABIE40_RS04065 0.63 -2.3 807,478 - ABIE40_RS04065 0.63 -1.4 807,478 - ABIE40_RS04065 0.63 -2.3 807,678 + ABIE40_RS04065 0.74 +1.0 807,678 + ABIE40_RS04065 0.74 -0.9 807,678 + ABIE40_RS04065 0.74 -1.0 807,678 + ABIE40_RS04065 0.74 -0.2 807,678 + ABIE40_RS04065 0.74 -1.0 807,678 + ABIE40_RS04065 0.74 -0.9 807,678 + ABIE40_RS04065 0.74 -0.7 807,678 + ABIE40_RS04065 0.74 -1.3 807,679 - ABIE40_RS04065 0.74 -1.6 807,679 - ABIE40_RS04065 0.74 -1.9 807,679 - ABIE40_RS04065 0.74 -1.6 807,681 + ABIE40_RS04065 0.75 -2.3 807,702 + ABIE40_RS04065 0.76 -1.4 807,702 + ABIE40_RS04065 0.76 -1.9 807,750 + ABIE40_RS04065 0.79 -2.6 807,751 - ABIE40_RS04065 0.79 -2.3 807,751 - ABIE40_RS04065 0.79 -0.8 807,774 + ABIE40_RS04065 0.80 +1.0 807,774 + ABIE40_RS04065 0.80 -0.8 807,780 + ABIE40_RS04065 0.80 -2.0 807,780 + ABIE40_RS04065 0.80 -3.1 807,780 + ABIE40_RS04065 0.80 -1.8 807,780 + ABIE40_RS04065 0.80 -1.7 807,780 + ABIE40_RS04065 0.80 -0.0 807,780 + ABIE40_RS04065 0.80 -0.5 807,780 + ABIE40_RS04065 0.80 -2.5 807,780 + ABIE40_RS04065 0.80 -1.6 807,780 + ABIE40_RS04065 0.80 -0.7 807,780 + ABIE40_RS04065 0.80 -0.7 807,781 - ABIE40_RS04065 0.80 -2.1 807,781 - ABIE40_RS04065 0.80 -2.7 807,886 - ABIE40_RS04065 0.87 -1.2 807,886 - ABIE40_RS04065 0.87 -2.7 807,894 + ABIE40_RS04065 0.87 -1.4 807,921 + ABIE40_RS04065 0.89 -1.3 807,921 + ABIE40_RS04065 0.89 -0.2 807,922 - ABIE40_RS04065 0.89 -2.2 807,922 - ABIE40_RS04065 0.89 -1.5 807,942 + ABIE40_RS04065 0.90 -3.2 807,942 + ABIE40_RS04065 0.90 +0.2 807,942 + ABIE40_RS04065 0.90 -1.7 807,942 + ABIE40_RS04065 0.90 -2.3 807,942 + ABIE40_RS04065 0.90 -1.4 807,975 + +1.8 807,975 + -1.5 807,975 + -1.2 808,078 - -1.9 808,078 - -1.8 808,110 + -1.4 808,110 + -1.0 808,110 + -0.8 808,110 + +0.4 808,110 + -0.7 808,110 + -0.7 808,110 + +0.1 808,111 - -0.7 808,111 - -2.1 808,258 + -0.8 808,258 + -0.0 808,259 - +1.6 808,259 - -0.3 808,336 - -2.5 808,494 + ABIE40_RS04070 0.24 -0.4 808,494 + ABIE40_RS04070 0.24 -2.5 808,674 + ABIE40_RS04070 0.43 -0.2 808,687 - ABIE40_RS04070 0.45 -3.4 808,688 + ABIE40_RS04070 0.45 -2.1 808,688 + ABIE40_RS04070 0.45 -2.1 808,688 + ABIE40_RS04070 0.45 -0.0 808,688 + ABIE40_RS04070 0.45 -2.9 808,688 + ABIE40_RS04070 0.45 -3.1 808,688 + ABIE40_RS04070 0.45 -2.7 808,689 - ABIE40_RS04070 0.45 +0.6 808,689 - ABIE40_RS04070 0.45 -1.9 808,878 + ABIE40_RS04070 0.65 -1.6 808,950 + ABIE40_RS04070 0.72 -0.7 809,050 + ABIE40_RS04070 0.83 -4.4 809,051 - ABIE40_RS04070 0.83 -0.6 809,051 - ABIE40_RS04070 0.83 -0.7 809,051 - ABIE40_RS04070 0.83 -2.6
Or see this region's nucleotide sequence