Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02330 and ABIE40_RS02335 are separated by 3 nucleotides ABIE40_RS02335 and ABIE40_RS02340 are separated by 212 nucleotides ABIE40_RS02340 and ABIE40_RS02345 are separated by 195 nucleotides
ABIE40_RS02330: ABIE40_RS02330 - Hsp33 family molecular chaperone, at 461,694 to 462,686
_RS02330
ABIE40_RS02335: ABIE40_RS02335 - Co2+/Mg2+ efflux protein ApaG, at 462,690 to 463,082
_RS02335
ABIE40_RS02340: ABIE40_RS02340 - O-succinylhomoserine sulfhydrylase, at 463,295 to 464,479
_RS02340
ABIE40_RS02345: ABIE40_RS02345 - 2'-deoxycytidine 5'-triphosphate deaminase, at 464,675 to 465,769
_RS02345
Position (kb) 463
464
465 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 462.505 kb on - strand, within ABIE40_RS02330 at 462.648 kb on + strand at 462.648 kb on + strand at 462.648 kb on + strand at 462.649 kb on - strand at 462.649 kb on - strand at 462.649 kb on - strand at 462.739 kb on - strand, within ABIE40_RS02335 at 462.739 kb on - strand, within ABIE40_RS02335 at 462.782 kb on - strand, within ABIE40_RS02335 at 462.832 kb on + strand, within ABIE40_RS02335 at 462.832 kb on + strand, within ABIE40_RS02335 at 462.832 kb on + strand, within ABIE40_RS02335 at 462.832 kb on + strand, within ABIE40_RS02335 at 462.832 kb on + strand, within ABIE40_RS02335 at 462.832 kb on + strand, within ABIE40_RS02335 at 462.832 kb on + strand, within ABIE40_RS02335 at 462.833 kb on - strand, within ABIE40_RS02335 at 462.833 kb on - strand, within ABIE40_RS02335 at 462.833 kb on - strand, within ABIE40_RS02335 at 462.833 kb on - strand, within ABIE40_RS02335 at 462.838 kb on + strand, within ABIE40_RS02335 at 462.838 kb on + strand, within ABIE40_RS02335 at 462.838 kb on + strand, within ABIE40_RS02335 at 462.838 kb on + strand, within ABIE40_RS02335 at 462.838 kb on + strand, within ABIE40_RS02335 at 462.838 kb on + strand, within ABIE40_RS02335 at 462.838 kb on + strand, within ABIE40_RS02335 at 462.838 kb on + strand, within ABIE40_RS02335 at 462.838 kb on + strand, within ABIE40_RS02335 at 462.839 kb on - strand, within ABIE40_RS02335 at 462.839 kb on - strand, within ABIE40_RS02335 at 462.839 kb on - strand, within ABIE40_RS02335 at 462.839 kb on - strand, within ABIE40_RS02335 at 462.839 kb on - strand, within ABIE40_RS02335 at 462.839 kb on - strand, within ABIE40_RS02335 at 462.839 kb on - strand, within ABIE40_RS02335 at 462.842 kb on + strand, within ABIE40_RS02335 at 462.842 kb on + strand, within ABIE40_RS02335 at 462.843 kb on - strand, within ABIE40_RS02335 at 462.843 kb on - strand, within ABIE40_RS02335 at 462.843 kb on - strand, within ABIE40_RS02335 at 462.922 kb on - strand, within ABIE40_RS02335 at 462.997 kb on + strand, within ABIE40_RS02335 at 462.997 kb on + strand, within ABIE40_RS02335 at 462.997 kb on + strand, within ABIE40_RS02335 at 462.998 kb on - strand, within ABIE40_RS02335 at 462.998 kb on - strand, within ABIE40_RS02335 at 462.998 kb on - strand, within ABIE40_RS02335 at 463.033 kb on + strand, within ABIE40_RS02335 at 463.034 kb on - strand, within ABIE40_RS02335 at 463.056 kb on + strand at 463.056 kb on + strand at 463.056 kb on + strand at 463.056 kb on + strand at 463.057 kb on - strand at 463.057 kb on - strand at 463.057 kb on - strand at 463.057 kb on - strand at 463.057 kb on - strand at 463.057 kb on - strand at 463.087 kb on + strand at 463.087 kb on + strand at 463.087 kb on + strand at 463.088 kb on - strand at 463.088 kb on - strand at 463.088 kb on - strand at 463.094 kb on + strand at 463.104 kb on - strand at 463.108 kb on + strand at 463.109 kb on - strand at 463.109 kb on - strand at 463.119 kb on + strand at 463.120 kb on - strand at 463.120 kb on - strand at 463.121 kb on + strand at 463.121 kb on + strand at 463.121 kb on + strand at 463.167 kb on + strand at 463.167 kb on + strand at 463.203 kb on - strand at 463.203 kb on - strand at 463.224 kb on + strand at 463.224 kb on + strand at 463.224 kb on + strand at 463.225 kb on - strand at 463.227 kb on + strand at 463.227 kb on + strand at 463.232 kb on + strand at 463.232 kb on + strand at 463.232 kb on + strand at 463.232 kb on + strand at 463.232 kb on + strand at 463.232 kb on + strand at 463.233 kb on - strand at 463.233 kb on - strand at 463.233 kb on - strand at 463.250 kb on + strand at 463.250 kb on + strand at 463.250 kb on + strand at 463.251 kb on - strand at 463.251 kb on - strand at 463.348 kb on + strand at 463.349 kb on - strand at 463.623 kb on + strand, within ABIE40_RS02340 at 463.623 kb on + strand, within ABIE40_RS02340 at 463.623 kb on + strand, within ABIE40_RS02340 at 463.624 kb on - strand, within ABIE40_RS02340 at 463.624 kb on - strand, within ABIE40_RS02340 at 463.779 kb on + strand, within ABIE40_RS02340 at 463.780 kb on - strand, within ABIE40_RS02340 at 463.780 kb on - strand, within ABIE40_RS02340 at 463.855 kb on + strand, within ABIE40_RS02340 at 463.855 kb on + strand, within ABIE40_RS02340 at 463.855 kb on + strand, within ABIE40_RS02340 at 463.856 kb on - strand, within ABIE40_RS02340 at 463.856 kb on - strand, within ABIE40_RS02340 at 463.856 kb on - strand, within ABIE40_RS02340 at 463.856 kb on - strand, within ABIE40_RS02340 at 463.856 kb on - strand, within ABIE40_RS02340 at 463.872 kb on + strand, within ABIE40_RS02340 at 463.872 kb on + strand, within ABIE40_RS02340 at 463.873 kb on - strand, within ABIE40_RS02340 at 463.873 kb on - strand, within ABIE40_RS02340 at 463.873 kb on - strand, within ABIE40_RS02340 at 463.988 kb on - strand, within ABIE40_RS02340 at 464.110 kb on - strand, within ABIE40_RS02340 at 464.173 kb on + strand, within ABIE40_RS02340 at 464.173 kb on + strand, within ABIE40_RS02340 at 464.173 kb on + strand, within ABIE40_RS02340 at 464.174 kb on - strand, within ABIE40_RS02340 at 464.174 kb on - strand, within ABIE40_RS02340 at 464.174 kb on - strand, within ABIE40_RS02340 at 464.174 kb on - strand, within ABIE40_RS02340 at 464.224 kb on + strand, within ABIE40_RS02340 at 464.316 kb on + strand, within ABIE40_RS02340 at 464.316 kb on + strand, within ABIE40_RS02340 at 464.316 kb on + strand, within ABIE40_RS02340 at 464.316 kb on + strand, within ABIE40_RS02340 at 464.317 kb on - strand, within ABIE40_RS02340 at 464.317 kb on - strand, within ABIE40_RS02340 at 464.317 kb on - strand, within ABIE40_RS02340 at 464.373 kb on + strand at 464.374 kb on - strand at 464.374 kb on - strand at 464.374 kb on - strand at 464.394 kb on + strand at 464.394 kb on + strand at 464.394 kb on + strand at 464.395 kb on - strand at 464.418 kb on + strand at 464.419 kb on - strand at 464.545 kb on + strand at 464.607 kb on + strand at 464.608 kb on - strand at 464.640 kb on - strand at 464.663 kb on + strand at 464.663 kb on + strand at 464.663 kb on + strand at 464.664 kb on - strand at 464.664 kb on - strand at 464.937 kb on - strand, within ABIE40_RS02345 at 464.938 kb on + strand, within ABIE40_RS02345 at 464.939 kb on - strand, within ABIE40_RS02345 at 465.048 kb on - strand, within ABIE40_RS02345 at 465.395 kb on + strand, within ABIE40_RS02345 at 465.397 kb on + strand, within ABIE40_RS02345 at 465.440 kb on + strand, within ABIE40_RS02345
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 462,505 - ABIE40_RS02330 0.82 -2.9 462,648 + +0.5 462,648 + -1.0 462,648 + +0.3 462,649 - -0.2 462,649 - -0.3 462,649 - +0.4 462,739 - ABIE40_RS02335 0.12 -0.9 462,739 - ABIE40_RS02335 0.12 +0.5 462,782 - ABIE40_RS02335 0.23 +0.0 462,832 + ABIE40_RS02335 0.36 +0.2 462,832 + ABIE40_RS02335 0.36 +0.4 462,832 + ABIE40_RS02335 0.36 +0.8 462,832 + ABIE40_RS02335 0.36 +0.1 462,832 + ABIE40_RS02335 0.36 +0.1 462,832 + ABIE40_RS02335 0.36 +0.1 462,832 + ABIE40_RS02335 0.36 +0.9 462,833 - ABIE40_RS02335 0.36 -0.1 462,833 - ABIE40_RS02335 0.36 -0.3 462,833 - ABIE40_RS02335 0.36 -0.9 462,833 - ABIE40_RS02335 0.36 -2.8 462,838 + ABIE40_RS02335 0.38 +0.7 462,838 + ABIE40_RS02335 0.38 +0.3 462,838 + ABIE40_RS02335 0.38 -1.1 462,838 + ABIE40_RS02335 0.38 +0.2 462,838 + ABIE40_RS02335 0.38 -0.0 462,838 + ABIE40_RS02335 0.38 +0.3 462,838 + ABIE40_RS02335 0.38 -1.5 462,838 + ABIE40_RS02335 0.38 +0.5 462,838 + ABIE40_RS02335 0.38 -0.2 462,839 - ABIE40_RS02335 0.38 +0.0 462,839 - ABIE40_RS02335 0.38 -1.9 462,839 - ABIE40_RS02335 0.38 +1.1 462,839 - ABIE40_RS02335 0.38 -0.2 462,839 - ABIE40_RS02335 0.38 +0.5 462,839 - ABIE40_RS02335 0.38 -1.3 462,839 - ABIE40_RS02335 0.38 -0.4 462,842 + ABIE40_RS02335 0.39 -0.7 462,842 + ABIE40_RS02335 0.39 -1.0 462,843 - ABIE40_RS02335 0.39 +1.5 462,843 - ABIE40_RS02335 0.39 -0.0 462,843 - ABIE40_RS02335 0.39 +0.1 462,922 - ABIE40_RS02335 0.59 -2.8 462,997 + ABIE40_RS02335 0.78 +1.1 462,997 + ABIE40_RS02335 0.78 +0.4 462,997 + ABIE40_RS02335 0.78 -0.6 462,998 - ABIE40_RS02335 0.78 +0.1 462,998 - ABIE40_RS02335 0.78 +2.0 462,998 - ABIE40_RS02335 0.78 +1.5 463,033 + ABIE40_RS02335 0.87 -1.1 463,034 - ABIE40_RS02335 0.88 -0.5 463,056 + +1.7 463,056 + +0.1 463,056 + -0.3 463,056 + -1.6 463,057 - +0.5 463,057 - -3.1 463,057 - +0.9 463,057 - -0.4 463,057 - +0.4 463,057 - -0.9 463,087 + +0.1 463,087 + +0.1 463,087 + -0.2 463,088 - +0.1 463,088 - -2.0 463,088 - -0.9 463,094 + -0.2 463,104 - +1.9 463,108 + -0.9 463,109 - -0.3 463,109 - +1.0 463,119 + -0.2 463,120 - +0.9 463,120 - +0.5 463,121 + -0.5 463,121 + -1.1 463,121 + -0.3 463,167 + +0.2 463,167 + -0.0 463,203 - -0.2 463,203 - -0.7 463,224 + -2.4 463,224 + -1.9 463,224 + -1.9 463,225 - +0.3 463,227 + +0.2 463,227 + -0.5 463,232 + -0.5 463,232 + -0.1 463,232 + -1.7 463,232 + -0.0 463,232 + -0.6 463,232 + -0.3 463,233 - -0.8 463,233 - -0.5 463,233 - +1.4 463,250 + -0.2 463,250 + -0.9 463,250 + -0.5 463,251 - -0.9 463,251 - +0.5 463,348 + -4.5 463,349 - -3.9 463,623 + ABIE40_RS02340 0.28 -0.6 463,623 + ABIE40_RS02340 0.28 -5.3 463,623 + ABIE40_RS02340 0.28 -0.6 463,624 - ABIE40_RS02340 0.28 -2.9 463,624 - ABIE40_RS02340 0.28 -4.3 463,779 + ABIE40_RS02340 0.41 -3.6 463,780 - ABIE40_RS02340 0.41 -3.2 463,780 - ABIE40_RS02340 0.41 -1.9 463,855 + ABIE40_RS02340 0.47 -4.2 463,855 + ABIE40_RS02340 0.47 -3.7 463,855 + ABIE40_RS02340 0.47 -2.5 463,856 - ABIE40_RS02340 0.47 -4.5 463,856 - ABIE40_RS02340 0.47 -4.1 463,856 - ABIE40_RS02340 0.47 -3.7 463,856 - ABIE40_RS02340 0.47 +0.7 463,856 - ABIE40_RS02340 0.47 -3.0 463,872 + ABIE40_RS02340 0.49 -2.0 463,872 + ABIE40_RS02340 0.49 -3.1 463,873 - ABIE40_RS02340 0.49 -1.9 463,873 - ABIE40_RS02340 0.49 -5.1 463,873 - ABIE40_RS02340 0.49 -3.1 463,988 - ABIE40_RS02340 0.58 -4.7 464,110 - ABIE40_RS02340 0.69 -5.4 464,173 + ABIE40_RS02340 0.74 -5.1 464,173 + ABIE40_RS02340 0.74 -4.8 464,173 + ABIE40_RS02340 0.74 -3.7 464,174 - ABIE40_RS02340 0.74 -3.7 464,174 - ABIE40_RS02340 0.74 -5.6 464,174 - ABIE40_RS02340 0.74 -5.2 464,174 - ABIE40_RS02340 0.74 -5.0 464,224 + ABIE40_RS02340 0.78 -3.9 464,316 + ABIE40_RS02340 0.86 -4.0 464,316 + ABIE40_RS02340 0.86 -2.0 464,316 + ABIE40_RS02340 0.86 -3.0 464,316 + ABIE40_RS02340 0.86 -1.9 464,317 - ABIE40_RS02340 0.86 -4.6 464,317 - ABIE40_RS02340 0.86 -6.1 464,317 - ABIE40_RS02340 0.86 +0.7 464,373 + -2.2 464,374 - -3.9 464,374 - -1.6 464,374 - -4.3 464,394 + -3.3 464,394 + -0.3 464,394 + -2.4 464,395 - -2.4 464,418 + -3.0 464,419 - -4.5 464,545 + -3.1 464,607 + -0.3 464,608 - -2.2 464,640 - -1.1 464,663 + +0.6 464,663 + -1.6 464,663 + -0.3 464,664 - +0.5 464,664 - +0.0 464,937 - ABIE40_RS02345 0.24 -0.6 464,938 + ABIE40_RS02345 0.24 -0.6 464,939 - ABIE40_RS02345 0.24 -0.7 465,048 - ABIE40_RS02345 0.34 -2.9 465,395 + ABIE40_RS02345 0.66 -0.5 465,397 + ABIE40_RS02345 0.66 -2.1 465,440 + ABIE40_RS02345 0.70 +0.3
Or see this region's nucleotide sequence