Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02320 and ABIE40_RS02325 are separated by 39 nucleotides ABIE40_RS02325 and ABIE40_RS02330 are separated by 94 nucleotides
ABIE40_RS02320: ABIE40_RS02320 - aspartate aminotransferase family protein, at 459,443 to 460,642
_RS02320
ABIE40_RS02325: ABIE40_RS02325 - ornithine carbamoyltransferase, at 460,682 to 461,599
_RS02325
ABIE40_RS02330: ABIE40_RS02330 - Hsp33 family molecular chaperone, at 461,694 to 462,686
_RS02330
Position (kb) 460
461
462 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 459.783 kb on - strand, within ABIE40_RS02320 at 459.811 kb on + strand, within ABIE40_RS02320 at 459.811 kb on + strand, within ABIE40_RS02320 at 459.812 kb on - strand, within ABIE40_RS02320 at 459.844 kb on + strand, within ABIE40_RS02320 at 459.882 kb on - strand, within ABIE40_RS02320 at 459.901 kb on + strand, within ABIE40_RS02320 at 459.901 kb on + strand, within ABIE40_RS02320 at 459.902 kb on - strand, within ABIE40_RS02320 at 460.133 kb on + strand, within ABIE40_RS02320 at 460.133 kb on + strand, within ABIE40_RS02320 at 460.134 kb on - strand, within ABIE40_RS02320 at 460.265 kb on + strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.648 kb on + strand at 460.648 kb on + strand at 460.648 kb on + strand at 460.649 kb on - strand at 460.657 kb on + strand at 460.672 kb on + strand at 460.672 kb on + strand at 460.673 kb on - strand at 460.850 kb on - strand, within ABIE40_RS02325 at 460.850 kb on - strand, within ABIE40_RS02325 at 461.072 kb on - strand, within ABIE40_RS02325 at 461.258 kb on + strand, within ABIE40_RS02325 at 461.258 kb on + strand, within ABIE40_RS02325 at 461.258 kb on + strand, within ABIE40_RS02325 at 461.259 kb on - strand, within ABIE40_RS02325 at 461.259 kb on - strand, within ABIE40_RS02325 at 461.259 kb on - strand, within ABIE40_RS02325 at 461.408 kb on + strand, within ABIE40_RS02325 at 461.409 kb on - strand, within ABIE40_RS02325 at 461.604 kb on + strand at 461.604 kb on + strand at 461.604 kb on + strand at 461.678 kb on + strand at 461.679 kb on - strand at 461.681 kb on + strand at 461.681 kb on + strand at 461.682 kb on - strand at 461.682 kb on - strand at 461.682 kb on - strand at 461.682 kb on - strand at 461.687 kb on + strand at 461.687 kb on + strand at 461.687 kb on + strand at 461.688 kb on - strand at 461.688 kb on - strand at 461.688 kb on - strand at 461.688 kb on - strand at 461.688 kb on - strand at 461.688 kb on - strand at 461.839 kb on - strand, within ABIE40_RS02330 at 461.839 kb on - strand, within ABIE40_RS02330 at 462.123 kb on + strand, within ABIE40_RS02330 at 462.124 kb on - strand, within ABIE40_RS02330 at 462.177 kb on + strand, within ABIE40_RS02330 at 462.177 kb on + strand, within ABIE40_RS02330 at 462.177 kb on + strand, within ABIE40_RS02330 at 462.178 kb on - strand, within ABIE40_RS02330 at 462.178 kb on - strand, within ABIE40_RS02330 at 462.178 kb on - strand, within ABIE40_RS02330 at 462.178 kb on - strand, within ABIE40_RS02330 at 462.505 kb on - strand, within ABIE40_RS02330
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 459,783 - ABIE40_RS02320 0.28 -3.5 459,811 + ABIE40_RS02320 0.31 -2.0 459,811 + ABIE40_RS02320 0.31 -0.9 459,812 - ABIE40_RS02320 0.31 -1.1 459,844 + ABIE40_RS02320 0.33 -3.6 459,882 - ABIE40_RS02320 0.37 -1.5 459,901 + ABIE40_RS02320 0.38 -0.6 459,901 + ABIE40_RS02320 0.38 -2.2 459,902 - ABIE40_RS02320 0.38 -1.9 460,133 + ABIE40_RS02320 0.57 -2.1 460,133 + ABIE40_RS02320 0.57 -0.9 460,134 - ABIE40_RS02320 0.58 -1.5 460,265 + ABIE40_RS02320 0.69 -2.2 460,266 - ABIE40_RS02320 0.69 -0.6 460,266 - ABIE40_RS02320 0.69 -2.3 460,266 - ABIE40_RS02320 0.69 -1.5 460,266 - ABIE40_RS02320 0.69 -1.6 460,266 - ABIE40_RS02320 0.69 -0.3 460,648 + -2.2 460,648 + -1.5 460,648 + -2.5 460,649 - -4.4 460,657 + -0.4 460,672 + -1.0 460,672 + -2.3 460,673 - -2.0 460,850 - ABIE40_RS02325 0.18 -3.0 460,850 - ABIE40_RS02325 0.18 -3.0 461,072 - ABIE40_RS02325 0.42 -1.9 461,258 + ABIE40_RS02325 0.63 -1.9 461,258 + ABIE40_RS02325 0.63 -4.4 461,258 + ABIE40_RS02325 0.63 -2.9 461,259 - ABIE40_RS02325 0.63 -2.1 461,259 - ABIE40_RS02325 0.63 -1.5 461,259 - ABIE40_RS02325 0.63 -2.4 461,408 + ABIE40_RS02325 0.79 -2.2 461,409 - ABIE40_RS02325 0.79 -2.3 461,604 + -0.3 461,604 + -0.8 461,604 + +0.2 461,678 + -0.5 461,679 - +1.0 461,681 + +3.7 461,681 + +0.1 461,682 - -0.2 461,682 - +0.0 461,682 - +0.4 461,682 - +1.1 461,687 + +0.6 461,687 + +0.5 461,687 + +0.5 461,688 - +0.8 461,688 - -1.3 461,688 - -0.7 461,688 - +0.9 461,688 - +1.7 461,688 - -1.1 461,839 - ABIE40_RS02330 0.15 -0.0 461,839 - ABIE40_RS02330 0.15 -0.3 462,123 + ABIE40_RS02330 0.43 -0.7 462,124 - ABIE40_RS02330 0.43 -0.6 462,177 + ABIE40_RS02330 0.49 +0.9 462,177 + ABIE40_RS02330 0.49 -0.3 462,177 + ABIE40_RS02330 0.49 -0.2 462,178 - ABIE40_RS02330 0.49 +1.4 462,178 - ABIE40_RS02330 0.49 -0.0 462,178 - ABIE40_RS02330 0.49 -0.3 462,178 - ABIE40_RS02330 0.49 -0.9 462,505 - ABIE40_RS02330 0.82 -2.9
Or see this region's nucleotide sequence