Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS02315 and ABIE40_RS02320 are separated by 426 nucleotides ABIE40_RS02320 and ABIE40_RS02325 are separated by 39 nucleotides
ABIE40_RS02315: ABIE40_RS02315 - GcrA family cell cycle regulator, at 458,498 to 459,016
_RS02315
ABIE40_RS02320: ABIE40_RS02320 - aspartate aminotransferase family protein, at 459,443 to 460,642
_RS02320
ABIE40_RS02325: ABIE40_RS02325 - ornithine carbamoyltransferase, at 460,682 to 461,599
_RS02325
Position (kb) 459
460
461 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 458.529 kb on + strand at 459.256 kb on + strand at 459.257 kb on - strand at 459.341 kb on + strand at 459.341 kb on + strand at 459.345 kb on + strand at 459.345 kb on + strand at 459.421 kb on - strand at 459.462 kb on + strand at 459.462 kb on + strand at 459.463 kb on - strand at 459.464 kb on + strand at 459.464 kb on + strand at 459.464 kb on + strand at 459.464 kb on + strand at 459.465 kb on - strand at 459.465 kb on - strand at 459.465 kb on - strand at 459.465 kb on - strand at 459.469 kb on + strand at 459.469 kb on + strand at 459.469 kb on + strand at 459.469 kb on + strand at 459.469 kb on + strand at 459.469 kb on + strand at 459.469 kb on + strand at 459.470 kb on - strand at 459.470 kb on - strand at 459.473 kb on + strand at 459.473 kb on + strand at 459.473 kb on + strand at 459.474 kb on - strand at 459.542 kb on + strand at 459.543 kb on - strand at 459.653 kb on + strand, within ABIE40_RS02320 at 459.653 kb on + strand, within ABIE40_RS02320 at 459.654 kb on - strand, within ABIE40_RS02320 at 459.654 kb on - strand, within ABIE40_RS02320 at 459.783 kb on - strand, within ABIE40_RS02320 at 459.811 kb on + strand, within ABIE40_RS02320 at 459.811 kb on + strand, within ABIE40_RS02320 at 459.812 kb on - strand, within ABIE40_RS02320 at 459.844 kb on + strand, within ABIE40_RS02320 at 459.882 kb on - strand, within ABIE40_RS02320 at 459.901 kb on + strand, within ABIE40_RS02320 at 459.901 kb on + strand, within ABIE40_RS02320 at 459.902 kb on - strand, within ABIE40_RS02320 at 460.133 kb on + strand, within ABIE40_RS02320 at 460.133 kb on + strand, within ABIE40_RS02320 at 460.134 kb on - strand, within ABIE40_RS02320 at 460.265 kb on + strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.266 kb on - strand, within ABIE40_RS02320 at 460.648 kb on + strand at 460.648 kb on + strand at 460.648 kb on + strand at 460.649 kb on - strand at 460.657 kb on + strand at 460.672 kb on + strand at 460.672 kb on + strand at 460.673 kb on - strand at 460.850 kb on - strand, within ABIE40_RS02325 at 460.850 kb on - strand, within ABIE40_RS02325 at 461.072 kb on - strand, within ABIE40_RS02325 at 461.258 kb on + strand, within ABIE40_RS02325 at 461.258 kb on + strand, within ABIE40_RS02325 at 461.258 kb on + strand, within ABIE40_RS02325 at 461.259 kb on - strand, within ABIE40_RS02325 at 461.259 kb on - strand, within ABIE40_RS02325 at 461.259 kb on - strand, within ABIE40_RS02325 at 461.408 kb on + strand, within ABIE40_RS02325 at 461.409 kb on - strand, within ABIE40_RS02325 at 461.604 kb on + strand at 461.604 kb on + strand at 461.604 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 458,529 + +0.3 459,256 + +0.4 459,257 - +1.0 459,341 + +0.7 459,341 + +0.7 459,345 + +0.4 459,345 + -0.3 459,421 - -3.7 459,462 + -2.2 459,462 + -4.1 459,463 - -2.0 459,464 + -1.6 459,464 + -3.9 459,464 + -3.7 459,464 + -3.0 459,465 - +1.7 459,465 - -3.9 459,465 - -3.2 459,465 - -3.7 459,469 + -4.1 459,469 + -2.2 459,469 + +0.3 459,469 + -2.4 459,469 + +0.7 459,469 + -4.3 459,469 + -4.0 459,470 - -2.1 459,470 - -0.9 459,473 + +0.1 459,473 + -2.7 459,473 + -2.7 459,474 - -1.9 459,542 + -4.5 459,543 - -2.5 459,653 + ABIE40_RS02320 0.17 -3.2 459,653 + ABIE40_RS02320 0.17 -2.5 459,654 - ABIE40_RS02320 0.18 -3.1 459,654 - ABIE40_RS02320 0.18 -2.2 459,783 - ABIE40_RS02320 0.28 -3.5 459,811 + ABIE40_RS02320 0.31 -2.0 459,811 + ABIE40_RS02320 0.31 -0.9 459,812 - ABIE40_RS02320 0.31 -1.1 459,844 + ABIE40_RS02320 0.33 -3.6 459,882 - ABIE40_RS02320 0.37 -1.5 459,901 + ABIE40_RS02320 0.38 -0.6 459,901 + ABIE40_RS02320 0.38 -2.2 459,902 - ABIE40_RS02320 0.38 -1.9 460,133 + ABIE40_RS02320 0.57 -2.1 460,133 + ABIE40_RS02320 0.57 -0.9 460,134 - ABIE40_RS02320 0.58 -1.5 460,265 + ABIE40_RS02320 0.69 -2.2 460,266 - ABIE40_RS02320 0.69 -0.6 460,266 - ABIE40_RS02320 0.69 -2.3 460,266 - ABIE40_RS02320 0.69 -1.5 460,266 - ABIE40_RS02320 0.69 -1.6 460,266 - ABIE40_RS02320 0.69 -0.3 460,648 + -2.2 460,648 + -1.5 460,648 + -2.5 460,649 - -4.4 460,657 + -0.4 460,672 + -1.0 460,672 + -2.3 460,673 - -2.0 460,850 - ABIE40_RS02325 0.18 -3.0 460,850 - ABIE40_RS02325 0.18 -3.0 461,072 - ABIE40_RS02325 0.42 -1.9 461,258 + ABIE40_RS02325 0.63 -1.9 461,258 + ABIE40_RS02325 0.63 -4.4 461,258 + ABIE40_RS02325 0.63 -2.9 461,259 - ABIE40_RS02325 0.63 -2.1 461,259 - ABIE40_RS02325 0.63 -1.5 461,259 - ABIE40_RS02325 0.63 -2.4 461,408 + ABIE40_RS02325 0.79 -2.2 461,409 - ABIE40_RS02325 0.79 -2.3 461,604 + -0.3 461,604 + -0.8 461,604 + +0.2
Or see this region's nucleotide sequence