Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01800 and ABIE40_RS01805 are separated by 55 nucleotides ABIE40_RS01805 and ABIE40_RS01810 overlap by 4 nucleotides ABIE40_RS01810 and ABIE40_RS01815 overlap by 4 nucleotides
ABIE40_RS01800: ABIE40_RS01800 - ATP-binding protein, at 356,394 to 358,640
_RS01800
ABIE40_RS01805: ABIE40_RS01805 - signal peptidase II, at 358,696 to 359,199
_RS01805
ABIE40_RS01810: ABIE40_RS01810 - RNA methyltransferase, at 359,196 to 360,053
_RS01810
ABIE40_RS01815: ABIE40_RS01815 - class I SAM-dependent methyltransferase, at 360,050 to 361,147
_RS01815
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.381 kb on + strand, within ABIE40_RS01800 at 358.381 kb on + strand, within ABIE40_RS01800 at 358.381 kb on + strand, within ABIE40_RS01800 at 358.381 kb on + strand, within ABIE40_RS01800 at 358.381 kb on + strand, within ABIE40_RS01800 at 358.381 kb on + strand, within ABIE40_RS01800 at 358.381 kb on + strand, within ABIE40_RS01800 at 358.381 kb on + strand, within ABIE40_RS01800 at 358.381 kb on + strand, within ABIE40_RS01800 at 358.382 kb on - strand, within ABIE40_RS01800 at 358.382 kb on - strand, within ABIE40_RS01800 at 358.382 kb on - strand, within ABIE40_RS01800 at 358.385 kb on + strand, within ABIE40_RS01800 at 358.385 kb on + strand, within ABIE40_RS01800 at 358.385 kb on + strand, within ABIE40_RS01800 at 358.385 kb on + strand, within ABIE40_RS01800 at 358.385 kb on + strand, within ABIE40_RS01800 at 358.385 kb on + strand, within ABIE40_RS01800 at 358.386 kb on - strand, within ABIE40_RS01800 at 358.386 kb on - strand, within ABIE40_RS01800 at 358.386 kb on - strand, within ABIE40_RS01800 at 358.386 kb on - strand, within ABIE40_RS01800 at 358.524 kb on + strand at 358.525 kb on - strand at 358.525 kb on - strand at 358.525 kb on - strand at 358.652 kb on - strand at 358.652 kb on - strand at 358.656 kb on + strand at 358.656 kb on + strand at 358.656 kb on + strand at 358.656 kb on + strand at 358.656 kb on + strand at 358.656 kb on + strand at 358.657 kb on - strand at 358.657 kb on - strand at 358.657 kb on - strand at 358.657 kb on - strand at 358.657 kb on - strand at 358.657 kb on - strand at 358.689 kb on + strand at 358.690 kb on - strand at 359.390 kb on - strand, within ABIE40_RS01810 at 359.390 kb on - strand, within ABIE40_RS01810 at 359.390 kb on - strand, within ABIE40_RS01810 at 359.855 kb on - strand, within ABIE40_RS01810 at 360.202 kb on - strand, within ABIE40_RS01815 at 360.202 kb on - strand, within ABIE40_RS01815 at 360.202 kb on - strand, within ABIE40_RS01815 at 360.223 kb on - strand, within ABIE40_RS01815 at 360.275 kb on - strand, within ABIE40_RS01815 at 360.275 kb on - strand, within ABIE40_RS01815 at 360.367 kb on - strand, within ABIE40_RS01815 at 360.367 kb on - strand, within ABIE40_RS01815 at 360.367 kb on - strand, within ABIE40_RS01815 at 360.367 kb on - strand, within ABIE40_RS01815 at 360.367 kb on - strand, within ABIE40_RS01815 at 360.367 kb on - strand, within ABIE40_RS01815 at 360.367 kb on - strand, within ABIE40_RS01815 at 360.371 kb on - strand, within ABIE40_RS01815 at 360.371 kb on - strand, within ABIE40_RS01815 at 360.371 kb on - strand, within ABIE40_RS01815 at 360.554 kb on - strand, within ABIE40_RS01815 at 360.556 kb on - strand, within ABIE40_RS01815 at 360.556 kb on - strand, within ABIE40_RS01815 at 360.849 kb on - strand, within ABIE40_RS01815 at 360.868 kb on - strand, within ABIE40_RS01815 at 360.868 kb on - strand, within ABIE40_RS01815 at 360.868 kb on - strand, within ABIE40_RS01815 at 360.868 kb on - strand, within ABIE40_RS01815 at 360.868 kb on - strand, within ABIE40_RS01815
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 358,381 + ABIE40_RS01800 0.88 -0.4 358,381 + ABIE40_RS01800 0.88 +0.0 358,381 + ABIE40_RS01800 0.88 +1.4 358,381 + ABIE40_RS01800 0.88 -3.3 358,381 + ABIE40_RS01800 0.88 -1.9 358,381 + ABIE40_RS01800 0.88 -1.8 358,381 + ABIE40_RS01800 0.88 +0.2 358,381 + ABIE40_RS01800 0.88 +0.1 358,381 + ABIE40_RS01800 0.88 +0.4 358,382 - ABIE40_RS01800 0.88 +1.0 358,382 - ABIE40_RS01800 0.88 -1.4 358,382 - ABIE40_RS01800 0.88 -1.0 358,385 + ABIE40_RS01800 0.89 +1.7 358,385 + ABIE40_RS01800 0.89 +1.6 358,385 + ABIE40_RS01800 0.89 +1.5 358,385 + ABIE40_RS01800 0.89 -0.9 358,385 + ABIE40_RS01800 0.89 +1.4 358,385 + ABIE40_RS01800 0.89 +0.2 358,386 - ABIE40_RS01800 0.89 +1.2 358,386 - ABIE40_RS01800 0.89 -0.5 358,386 - ABIE40_RS01800 0.89 +0.3 358,386 - ABIE40_RS01800 0.89 +0.1 358,524 + +0.1 358,525 - -0.9 358,525 - -0.0 358,525 - +1.8 358,652 - +1.2 358,652 - -0.0 358,656 + +0.0 358,656 + -0.3 358,656 + +0.3 358,656 + +0.3 358,656 + -1.2 358,656 + +0.2 358,657 - -0.7 358,657 - -2.1 358,657 - -0.5 358,657 - +1.3 358,657 - +0.5 358,657 - -0.4 358,689 + +1.2 358,690 - +1.8 359,390 - ABIE40_RS01810 0.23 -0.9 359,390 - ABIE40_RS01810 0.23 -1.8 359,390 - ABIE40_RS01810 0.23 -0.9 359,855 - ABIE40_RS01810 0.77 -1.4 360,202 - ABIE40_RS01815 0.14 -0.2 360,202 - ABIE40_RS01815 0.14 -0.9 360,202 - ABIE40_RS01815 0.14 +0.1 360,223 - ABIE40_RS01815 0.16 -0.9 360,275 - ABIE40_RS01815 0.20 -0.4 360,275 - ABIE40_RS01815 0.20 +0.3 360,367 - ABIE40_RS01815 0.29 +0.5 360,367 - ABIE40_RS01815 0.29 +0.3 360,367 - ABIE40_RS01815 0.29 -0.1 360,367 - ABIE40_RS01815 0.29 -1.3 360,367 - ABIE40_RS01815 0.29 -1.8 360,367 - ABIE40_RS01815 0.29 -0.0 360,367 - ABIE40_RS01815 0.29 -0.6 360,371 - ABIE40_RS01815 0.29 +2.0 360,371 - ABIE40_RS01815 0.29 +1.0 360,371 - ABIE40_RS01815 0.29 -0.4 360,554 - ABIE40_RS01815 0.46 -0.8 360,556 - ABIE40_RS01815 0.46 +2.2 360,556 - ABIE40_RS01815 0.46 +0.3 360,849 - ABIE40_RS01815 0.73 -1.7 360,868 - ABIE40_RS01815 0.74 +2.0 360,868 - ABIE40_RS01815 0.74 -1.7 360,868 - ABIE40_RS01815 0.74 -1.0 360,868 - ABIE40_RS01815 0.74 +0.4 360,868 - ABIE40_RS01815 0.74 -0.7
Or see this region's nucleotide sequence