Experiment: Formate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01760 and ABIE40_RS01765 overlap by 4 nucleotides ABIE40_RS01765 and ABIE40_RS01770 are separated by 127 nucleotides ABIE40_RS01770 and ABIE40_RS01775 are separated by 10 nucleotides
ABIE40_RS01760: ABIE40_RS01760 - murein biosynthesis integral membrane protein MurJ, at 344,543 to 346,124
_RS01760
ABIE40_RS01765: ABIE40_RS01765 - [protein-PII] uridylyltransferase, at 346,121 to 349,015
_RS01765
ABIE40_RS01770: ABIE40_RS01770 - hypothetical protein, at 349,143 to 349,415
_RS01770
ABIE40_RS01775: ABIE40_RS01775 - DNA mismatch repair protein MutS, at 349,426 to 352,152
_RS01775
Position (kb) 346
347
348
349
350 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 346.312 kb on - strand at 346.312 kb on - strand at 346.894 kb on - strand, within ABIE40_RS01765 at 346.894 kb on - strand, within ABIE40_RS01765 at 346.903 kb on - strand, within ABIE40_RS01765 at 346.918 kb on - strand, within ABIE40_RS01765 at 347.044 kb on - strand, within ABIE40_RS01765 at 347.374 kb on - strand, within ABIE40_RS01765 at 347.374 kb on - strand, within ABIE40_RS01765 at 347.374 kb on - strand, within ABIE40_RS01765 at 347.500 kb on - strand, within ABIE40_RS01765 at 347.500 kb on - strand, within ABIE40_RS01765 at 347.509 kb on - strand, within ABIE40_RS01765 at 347.509 kb on - strand, within ABIE40_RS01765 at 347.509 kb on - strand, within ABIE40_RS01765 at 347.509 kb on - strand, within ABIE40_RS01765 at 347.509 kb on - strand, within ABIE40_RS01765 at 347.509 kb on - strand, within ABIE40_RS01765 at 347.509 kb on - strand, within ABIE40_RS01765 at 348.544 kb on - strand, within ABIE40_RS01765 at 348.916 kb on - strand at 349.021 kb on - strand at 349.023 kb on - strand at 349.023 kb on - strand at 349.023 kb on - strand at 349.023 kb on - strand at 349.023 kb on - strand at 349.023 kb on - strand at 349.023 kb on - strand at 349.023 kb on - strand at 349.031 kb on + strand at 349.056 kb on + strand at 349.169 kb on - strand at 349.194 kb on - strand, within ABIE40_RS01770 at 349.194 kb on - strand, within ABIE40_RS01770 at 349.300 kb on + strand, within ABIE40_RS01770 at 349.371 kb on - strand, within ABIE40_RS01770 at 349.371 kb on - strand, within ABIE40_RS01770 at 349.427 kb on + strand at 349.427 kb on + strand at 349.428 kb on - strand at 349.428 kb on - strand at 349.451 kb on + strand at 349.452 kb on - strand at 349.452 kb on - strand at 349.539 kb on + strand at 349.539 kb on + strand at 349.539 kb on + strand at 349.692 kb on + strand at 349.693 kb on - strand at 349.693 kb on - strand at 349.697 kb on + strand at 349.697 kb on + strand at 349.697 kb on + strand at 349.697 kb on + strand at 349.697 kb on + strand at 349.697 kb on + strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand at 349.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate (C) remove 346,312 - -1.7 346,312 - +1.8 346,894 - ABIE40_RS01765 0.27 -1.0 346,894 - ABIE40_RS01765 0.27 -1.6 346,903 - ABIE40_RS01765 0.27 -1.4 346,918 - ABIE40_RS01765 0.28 -1.0 347,044 - ABIE40_RS01765 0.32 -1.8 347,374 - ABIE40_RS01765 0.43 -1.0 347,374 - ABIE40_RS01765 0.43 -0.9 347,374 - ABIE40_RS01765 0.43 -1.0 347,500 - ABIE40_RS01765 0.48 -3.5 347,500 - ABIE40_RS01765 0.48 -1.7 347,509 - ABIE40_RS01765 0.48 -0.5 347,509 - ABIE40_RS01765 0.48 -1.4 347,509 - ABIE40_RS01765 0.48 -0.8 347,509 - ABIE40_RS01765 0.48 -0.6 347,509 - ABIE40_RS01765 0.48 -1.4 347,509 - ABIE40_RS01765 0.48 -1.3 347,509 - ABIE40_RS01765 0.48 -3.1 348,544 - ABIE40_RS01765 0.84 -1.2 348,916 - -0.6 349,021 - +0.9 349,023 - +0.4 349,023 - -0.0 349,023 - +0.4 349,023 - +0.4 349,023 - +0.6 349,023 - -1.6 349,023 - +0.0 349,023 - -0.3 349,031 + -0.8 349,056 + +0.2 349,169 - -2.1 349,194 - ABIE40_RS01770 0.19 -1.7 349,194 - ABIE40_RS01770 0.19 -0.4 349,300 + ABIE40_RS01770 0.58 -1.2 349,371 - ABIE40_RS01770 0.84 -1.0 349,371 - ABIE40_RS01770 0.84 -1.0 349,427 + -0.6 349,427 + +0.7 349,428 - -0.7 349,428 - +0.2 349,451 + -0.1 349,452 - -3.9 349,452 - -0.1 349,539 + -0.6 349,539 + +0.2 349,539 + +2.4 349,692 + +1.4 349,693 - -1.6 349,693 - -0.1 349,697 + -0.2 349,697 + +0.7 349,697 + +1.2 349,697 + -1.8 349,697 + -0.2 349,697 + -0.2 349,698 - -0.6 349,698 - -2.6 349,698 - -0.2 349,698 - +0.4 349,698 - -0.4 349,698 - +0.2 349,698 - -3.1 349,698 - -0.0 349,698 - +0.8 349,698 - +1.2 349,698 - +2.0 349,698 - -1.0
Or see this region's nucleotide sequence