Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28750 and ABID97_RS28755 overlap by 4 nucleotides ABID97_RS28755 and ABID97_RS28760 are separated by 4 nucleotides ABID97_RS28760 and ABID97_RS28765 are separated by 24 nucleotides ABID97_RS28765 and ABID97_RS28770 are separated by 1 nucleotides
ABID97_RS28750: ABID97_RS28750 - FAD-binding oxidoreductase, at 667,285 to 668,685
_RS28750
ABID97_RS28755: ABID97_RS28755 - shikimate dehydrogenase, at 668,682 to 669,497
_RS28755
ABID97_RS28760: ABID97_RS28760 - aldehyde dehydrogenase family protein, at 669,502 to 670,947
_RS28760
ABID97_RS28765: ABID97_RS28765 - SDR family NAD(P)-dependent oxidoreductase, at 670,972 to 671,751
_RS28765
ABID97_RS28770: ABID97_RS28770 - ABC transporter ATP-binding protein, at 671,753 to 672,457
_RS28770
Position (kb) 669
670
671 Strain fitness (log2 ratio) -1
0
1 at 668.600 kb on + strand at 668.601 kb on - strand at 669.068 kb on - strand, within ABID97_RS28755 at 669.515 kb on + strand at 669.536 kb on + strand at 669.537 kb on - strand at 669.611 kb on + strand at 669.858 kb on - strand, within ABID97_RS28760 at 670.923 kb on - strand at 671.279 kb on + strand, within ABID97_RS28765
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 668,600 + +0.0 668,601 - -0.3 669,068 - ABID97_RS28755 0.47 -0.9 669,515 + -1.0 669,536 + -1.0 669,537 - -0.5 669,611 + -0.4 669,858 - ABID97_RS28760 0.25 -1.5 670,923 - -0.8 671,279 + ABID97_RS28765 0.39 +0.9
Or see this region's nucleotide sequence