Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26635 and ABID97_RS26640 are separated by 16 nucleotides ABID97_RS26640 and ABID97_RS26645 are separated by 175 nucleotides ABID97_RS26645 and ABID97_RS26650 are separated by 7 nucleotides
ABID97_RS26635: ABID97_RS26635 - LysR family transcriptional regulator, at 252,358 to 253,275
_RS26635
ABID97_RS26640: ABID97_RS26640 - hypothetical protein, at 253,292 to 253,549
_RS26640
ABID97_RS26645: ABID97_RS26645 - hypothetical protein, at 253,725 to 254,081
_RS26645
ABID97_RS26650: ABID97_RS26650 - zeta toxin family protein, at 254,089 to 254,682
_RS26650
Position (kb) 253
254 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 252.368 kb on + strand at 252.369 kb on - strand at 252.369 kb on - strand at 252.949 kb on + strand, within ABID97_RS26635 at 253.046 kb on - strand, within ABID97_RS26635 at 253.192 kb on + strand at 253.192 kb on + strand at 253.192 kb on + strand at 253.193 kb on - strand at 253.464 kb on + strand, within ABID97_RS26640 at 253.465 kb on - strand, within ABID97_RS26640 at 253.465 kb on - strand, within ABID97_RS26640 at 253.465 kb on - strand, within ABID97_RS26640 at 253.539 kb on + strand at 253.539 kb on + strand at 253.724 kb on + strand at 253.826 kb on - strand, within ABID97_RS26645 at 254.162 kb on + strand, within ABID97_RS26650 at 254.162 kb on + strand, within ABID97_RS26650 at 254.163 kb on - strand, within ABID97_RS26650 at 254.163 kb on - strand, within ABID97_RS26650 at 254.389 kb on + strand, within ABID97_RS26650
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 252,368 + -1.1 252,369 - +0.4 252,369 - -0.2 252,949 + ABID97_RS26635 0.64 +0.7 253,046 - ABID97_RS26635 0.75 +0.0 253,192 + +1.1 253,192 + -0.0 253,192 + -2.3 253,193 - -0.5 253,464 + ABID97_RS26640 0.67 -0.7 253,465 - ABID97_RS26640 0.67 -0.8 253,465 - ABID97_RS26640 0.67 -0.1 253,465 - ABID97_RS26640 0.67 +0.2 253,539 + -1.7 253,539 + +3.1 253,724 + +0.3 253,826 - ABID97_RS26645 0.28 -1.1 254,162 + ABID97_RS26650 0.12 +1.0 254,162 + ABID97_RS26650 0.12 -0.1 254,163 - ABID97_RS26650 0.12 -0.3 254,163 - ABID97_RS26650 0.12 -0.6 254,389 + ABID97_RS26650 0.51 -1.2
Or see this region's nucleotide sequence