Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25080

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25070 and ABID97_RS25075 are separated by 30 nucleotidesABID97_RS25075 and ABID97_RS25080 are separated by 121 nucleotidesABID97_RS25080 and ABID97_RS25085 are separated by 163 nucleotidesABID97_RS25085 and ABID97_RS25090 overlap by 4 nucleotides ABID97_RS25070: ABID97_RS25070 - ABC transporter substrate-binding protein, at 5,194,428 to 5,195,534 _RS25070 ABID97_RS25075: ABID97_RS25075 - hypothetical protein, at 5,195,565 to 5,195,711 _RS25075 ABID97_RS25080: ABID97_RS25080 - MFS transporter, at 5,195,833 to 5,197,527 _RS25080 ABID97_RS25085: ABID97_RS25085 - 2-hydroxychromene-2-carboxylate isomerase, at 5,197,691 to 5,198,338 _RS25085 ABID97_RS25090: ABID97_RS25090 - DUF1289 domain-containing protein, at 5,198,335 to 5,198,604 _RS25090 Position (kb) 5195 5196 5197 5198Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5194.851 kb on + strand, within ABID97_RS25070at 5194.851 kb on + strand, within ABID97_RS25070at 5194.920 kb on + strand, within ABID97_RS25070at 5194.921 kb on - strand, within ABID97_RS25070at 5194.921 kb on - strand, within ABID97_RS25070at 5195.031 kb on + strand, within ABID97_RS25070at 5195.032 kb on - strand, within ABID97_RS25070at 5195.032 kb on - strand, within ABID97_RS25070at 5195.259 kb on + strand, within ABID97_RS25070at 5195.434 kb on - strandat 5195.461 kb on - strandat 5195.461 kb on - strandat 5195.461 kb on - strandat 5195.461 kb on - strandat 5195.533 kb on - strandat 5195.567 kb on - strandat 5195.567 kb on - strandat 5195.716 kb on + strandat 5195.717 kb on - strandat 5195.717 kb on - strandat 5195.846 kb on + strandat 5195.883 kb on + strandat 5195.936 kb on + strandat 5195.936 kb on + strandat 5195.936 kb on + strandat 5195.937 kb on - strandat 5195.937 kb on - strandat 5195.937 kb on - strandat 5195.937 kb on - strandat 5195.937 kb on - strandat 5195.937 kb on - strandat 5196.341 kb on + strand, within ABID97_RS25080at 5196.342 kb on - strand, within ABID97_RS25080at 5196.342 kb on - strand, within ABID97_RS25080at 5196.342 kb on - strand, within ABID97_RS25080at 5196.342 kb on - strand, within ABID97_RS25080at 5196.342 kb on - strand, within ABID97_RS25080at 5196.365 kb on + strand, within ABID97_RS25080at 5196.533 kb on + strand, within ABID97_RS25080at 5196.533 kb on + strand, within ABID97_RS25080at 5196.533 kb on + strand, within ABID97_RS25080at 5196.533 kb on + strand, within ABID97_RS25080at 5196.533 kb on + strand, within ABID97_RS25080at 5196.534 kb on - strand, within ABID97_RS25080at 5196.534 kb on - strand, within ABID97_RS25080at 5196.534 kb on - strand, within ABID97_RS25080at 5196.534 kb on - strand, within ABID97_RS25080at 5196.707 kb on + strand, within ABID97_RS25080at 5196.708 kb on - strand, within ABID97_RS25080at 5197.040 kb on + strand, within ABID97_RS25080at 5197.040 kb on + strand, within ABID97_RS25080at 5197.040 kb on + strand, within ABID97_RS25080at 5197.040 kb on + strand, within ABID97_RS25080at 5197.079 kb on + strand, within ABID97_RS25080at 5197.079 kb on + strand, within ABID97_RS25080at 5197.079 kb on + strand, within ABID97_RS25080at 5197.080 kb on - strand, within ABID97_RS25080at 5197.080 kb on - strand, within ABID97_RS25080at 5197.080 kb on - strand, within ABID97_RS25080at 5197.080 kb on - strand, within ABID97_RS25080at 5197.175 kb on + strand, within ABID97_RS25080at 5197.176 kb on - strand, within ABID97_RS25080at 5197.176 kb on - strand, within ABID97_RS25080at 5197.176 kb on - strand, within ABID97_RS25080at 5197.241 kb on + strand, within ABID97_RS25080at 5197.241 kb on + strand, within ABID97_RS25080at 5197.241 kb on + strand, within ABID97_RS25080at 5197.241 kb on + strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.242 kb on - strand, within ABID97_RS25080at 5197.406 kb on + strandat 5197.406 kb on + strandat 5197.407 kb on - strandat 5197.407 kb on - strandat 5197.528 kb on - strandat 5197.528 kb on - strandat 5197.545 kb on + strandat 5197.545 kb on + strandat 5197.545 kb on + strandat 5197.546 kb on - strandat 5197.546 kb on - strandat 5197.635 kb on + strandat 5197.643 kb on - strandat 5198.085 kb on + strand, within ABID97_RS25085at 5198.085 kb on + strand, within ABID97_RS25085at 5198.085 kb on + strand, within ABID97_RS25085at 5198.086 kb on - strand, within ABID97_RS25085at 5198.086 kb on - strand, within ABID97_RS25085at 5198.235 kb on + strand, within ABID97_RS25085at 5198.247 kb on + strand, within ABID97_RS25085at 5198.247 kb on + strand, within ABID97_RS25085at 5198.248 kb on - strand, within ABID97_RS25085at 5198.320 kb on - strandat 5198.398 kb on + strand, within ABID97_RS25090

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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5,194,851 + ABID97_RS25070 0.38 +1.4
5,194,851 + ABID97_RS25070 0.38 -0.7
5,194,920 + ABID97_RS25070 0.44 -1.2
5,194,921 - ABID97_RS25070 0.45 +0.1
5,194,921 - ABID97_RS25070 0.45 -0.8
5,195,031 + ABID97_RS25070 0.54 +0.2
5,195,032 - ABID97_RS25070 0.55 -1.0
5,195,032 - ABID97_RS25070 0.55 +0.6
5,195,259 + ABID97_RS25070 0.75 -0.1
5,195,434 - +0.2
5,195,461 - -0.3
5,195,461 - -0.4
5,195,461 - -0.7
5,195,461 - -0.1
5,195,533 - +0.0
5,195,567 - -0.9
5,195,567 - +0.1
5,195,716 + +1.8
5,195,717 - -0.9
5,195,717 - -0.3
5,195,846 + -1.1
5,195,883 + -0.5
5,195,936 + -3.8
5,195,936 + -2.6
5,195,936 + -0.4
5,195,937 - -1.8
5,195,937 - -2.6
5,195,937 - -1.6
5,195,937 - +0.4
5,195,937 - -2.4
5,195,937 - -1.7
5,196,341 + ABID97_RS25080 0.30 -1.0
5,196,342 - ABID97_RS25080 0.30 -1.9
5,196,342 - ABID97_RS25080 0.30 -2.6
5,196,342 - ABID97_RS25080 0.30 +0.9
5,196,342 - ABID97_RS25080 0.30 +1.9
5,196,342 - ABID97_RS25080 0.30 -3.0
5,196,365 + ABID97_RS25080 0.31 -1.6
5,196,533 + ABID97_RS25080 0.41 -2.1
5,196,533 + ABID97_RS25080 0.41 -1.2
5,196,533 + ABID97_RS25080 0.41 -1.2
5,196,533 + ABID97_RS25080 0.41 -1.0
5,196,533 + ABID97_RS25080 0.41 -3.4
5,196,534 - ABID97_RS25080 0.41 -2.0
5,196,534 - ABID97_RS25080 0.41 +0.3
5,196,534 - ABID97_RS25080 0.41 +0.0
5,196,534 - ABID97_RS25080 0.41 -1.5
5,196,707 + ABID97_RS25080 0.52 -1.6
5,196,708 - ABID97_RS25080 0.52 -2.3
5,197,040 + ABID97_RS25080 0.71 +0.2
5,197,040 + ABID97_RS25080 0.71 -2.9
5,197,040 + ABID97_RS25080 0.71 -4.1
5,197,040 + ABID97_RS25080 0.71 -2.6
5,197,079 + ABID97_RS25080 0.74 -0.4
5,197,079 + ABID97_RS25080 0.74 -2.5
5,197,079 + ABID97_RS25080 0.74 -0.5
5,197,080 - ABID97_RS25080 0.74 -2.6
5,197,080 - ABID97_RS25080 0.74 -3.5
5,197,080 - ABID97_RS25080 0.74 -1.9
5,197,080 - ABID97_RS25080 0.74 -2.3
5,197,175 + ABID97_RS25080 0.79 -0.1
5,197,176 - ABID97_RS25080 0.79 -4.6
5,197,176 - ABID97_RS25080 0.79 -0.9
5,197,176 - ABID97_RS25080 0.79 -0.5
5,197,241 + ABID97_RS25080 0.83 -0.7
5,197,241 + ABID97_RS25080 0.83 -1.4
5,197,241 + ABID97_RS25080 0.83 -2.4
5,197,241 + ABID97_RS25080 0.83 -2.5
5,197,242 - ABID97_RS25080 0.83 -2.1
5,197,242 - ABID97_RS25080 0.83 -1.6
5,197,242 - ABID97_RS25080 0.83 -1.4
5,197,242 - ABID97_RS25080 0.83 -1.7
5,197,242 - ABID97_RS25080 0.83 -2.6
5,197,242 - ABID97_RS25080 0.83 +2.6
5,197,406 + -0.3
5,197,406 + -0.7
5,197,407 - +1.6
5,197,407 - -1.6
5,197,528 - -0.9
5,197,528 - -1.4
5,197,545 + +3.2
5,197,545 + +0.9
5,197,545 + -1.3
5,197,546 - -0.6
5,197,546 - -0.2
5,197,635 + -2.9
5,197,643 - +0.4
5,198,085 + ABID97_RS25085 0.61 -1.1
5,198,085 + ABID97_RS25085 0.61 +0.0
5,198,085 + ABID97_RS25085 0.61 +0.2
5,198,086 - ABID97_RS25085 0.61 -1.7
5,198,086 - ABID97_RS25085 0.61 +0.4
5,198,235 + ABID97_RS25085 0.84 -1.4
5,198,247 + ABID97_RS25085 0.86 +1.2
5,198,247 + ABID97_RS25085 0.86 -1.0
5,198,248 - ABID97_RS25085 0.86 +0.7
5,198,320 - -2.4
5,198,398 + ABID97_RS25090 0.23 -0.7

Or see this region's nucleotide sequence