Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22375 and ABID97_RS22380 are separated by 56 nucleotides ABID97_RS22380 and ABID97_RS22385 are separated by 66 nucleotides ABID97_RS22385 and ABID97_RS22390 are separated by 12 nucleotides
ABID97_RS22375: ABID97_RS22375 - OsmC family protein, at 4,636,218 to 4,636,616
_RS22375
ABID97_RS22380: ABID97_RS22380 - winged helix-turn-helix transcriptional regulator, at 4,636,673 to 4,637,140
_RS22380
ABID97_RS22385: ABID97_RS22385 - D-amino acid dehydrogenase, at 4,637,207 to 4,638,571
_RS22385
ABID97_RS22390: ABID97_RS22390 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 4,638,584 to 4,639,666
_RS22390
Position (kb) 4637
4638
4639 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4636.438 kb on + strand, within ABID97_RS22375 at 4636.439 kb on - strand, within ABID97_RS22375 at 4636.655 kb on - strand at 4636.726 kb on - strand, within ABID97_RS22380 at 4636.726 kb on - strand, within ABID97_RS22380 at 4636.726 kb on - strand, within ABID97_RS22380 at 4637.233 kb on - strand at 4637.244 kb on - strand at 4637.318 kb on + strand at 4637.318 kb on + strand at 4637.318 kb on + strand at 4637.318 kb on + strand at 4637.318 kb on + strand at 4637.321 kb on + strand at 4637.321 kb on + strand at 4637.321 kb on + strand at 4637.321 kb on + strand at 4637.322 kb on - strand at 4637.322 kb on - strand at 4637.322 kb on - strand at 4637.322 kb on - strand at 4637.322 kb on - strand at 4637.759 kb on + strand, within ABID97_RS22385 at 4637.760 kb on - strand, within ABID97_RS22385 at 4638.018 kb on - strand, within ABID97_RS22385 at 4638.516 kb on - strand at 4638.516 kb on - strand at 4638.572 kb on + strand at 4638.573 kb on - strand at 4638.659 kb on + strand at 4638.659 kb on + strand at 4638.660 kb on - strand at 4638.660 kb on - strand at 4638.715 kb on - strand, within ABID97_RS22390 at 4638.715 kb on - strand, within ABID97_RS22390 at 4638.970 kb on - strand, within ABID97_RS22390 at 4638.970 kb on - strand, within ABID97_RS22390 at 4638.970 kb on - strand, within ABID97_RS22390 at 4639.095 kb on + strand, within ABID97_RS22390 at 4639.096 kb on - strand, within ABID97_RS22390 at 4639.096 kb on - strand, within ABID97_RS22390 at 4639.212 kb on + strand, within ABID97_RS22390 at 4639.213 kb on - strand, within ABID97_RS22390 at 4639.213 kb on - strand, within ABID97_RS22390 at 4639.213 kb on - strand, within ABID97_RS22390 at 4639.341 kb on + strand, within ABID97_RS22390 at 4639.342 kb on - strand, within ABID97_RS22390 at 4639.371 kb on + strand, within ABID97_RS22390 at 4639.407 kb on + strand, within ABID97_RS22390 at 4639.407 kb on + strand, within ABID97_RS22390 at 4639.422 kb on + strand, within ABID97_RS22390
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 4,636,438 + ABID97_RS22375 0.55 +1.1 4,636,439 - ABID97_RS22375 0.55 -0.8 4,636,655 - -0.4 4,636,726 - ABID97_RS22380 0.11 -4.5 4,636,726 - ABID97_RS22380 0.11 -3.5 4,636,726 - ABID97_RS22380 0.11 -2.2 4,637,233 - -1.1 4,637,244 - -2.0 4,637,318 + -3.3 4,637,318 + -0.7 4,637,318 + -3.1 4,637,318 + -3.9 4,637,318 + +0.8 4,637,321 + -1.6 4,637,321 + -3.6 4,637,321 + -2.2 4,637,321 + -2.0 4,637,322 - -2.1 4,637,322 - -4.2 4,637,322 - -4.2 4,637,322 - -0.8 4,637,322 - -2.8 4,637,759 + ABID97_RS22385 0.40 -3.3 4,637,760 - ABID97_RS22385 0.41 -0.5 4,638,018 - ABID97_RS22385 0.59 -3.4 4,638,516 - +1.2 4,638,516 - -0.9 4,638,572 + +0.7 4,638,573 - -0.3 4,638,659 + +0.4 4,638,659 + +0.2 4,638,660 - -0.3 4,638,660 - +0.2 4,638,715 - ABID97_RS22390 0.12 -0.7 4,638,715 - ABID97_RS22390 0.12 -0.8 4,638,970 - ABID97_RS22390 0.36 +0.2 4,638,970 - ABID97_RS22390 0.36 +2.1 4,638,970 - ABID97_RS22390 0.36 -1.1 4,639,095 + ABID97_RS22390 0.47 -0.2 4,639,096 - ABID97_RS22390 0.47 -0.4 4,639,096 - ABID97_RS22390 0.47 +0.3 4,639,212 + ABID97_RS22390 0.58 -0.5 4,639,213 - ABID97_RS22390 0.58 -0.4 4,639,213 - ABID97_RS22390 0.58 +0.8 4,639,213 - ABID97_RS22390 0.58 -0.1 4,639,341 + ABID97_RS22390 0.70 -0.7 4,639,342 - ABID97_RS22390 0.70 +0.8 4,639,371 + ABID97_RS22390 0.73 -0.4 4,639,407 + ABID97_RS22390 0.76 +0.5 4,639,407 + ABID97_RS22390 0.76 +0.0 4,639,422 + ABID97_RS22390 0.77 +0.8
Or see this region's nucleotide sequence