Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21100 and ABID97_RS21105 overlap by 4 nucleotides ABID97_RS21105 and ABID97_RS21110 are separated by 31 nucleotides ABID97_RS21110 and ABID97_RS21115 are separated by 16 nucleotides ABID97_RS21115 and ABID97_RS21120 overlap by 17 nucleotides
ABID97_RS21100: ABID97_RS21100 - GntR family transcriptional regulator, at 4,356,567 to 4,357,322
_RS21100
ABID97_RS21105: ABID97_RS21105 - transporter substrate-binding domain-containing protein, at 4,357,319 to 4,358,119
_RS21105
ABID97_RS21110: ABID97_RS21110 - amino acid ABC transporter permease, at 4,358,151 to 4,358,807
_RS21110
ABID97_RS21115: ABID97_RS21115 - amino acid ABC transporter permease, at 4,358,824 to 4,359,477
_RS21115
ABID97_RS21120: ABID97_RS21120 - amino acid ABC transporter ATP-binding protein, at 4,359,461 to 4,360,246
_RS21120
Position (kb) 4358
4359 Strain fitness (log2 ratio) -1
0
1
2
3 at 4357.302 kb on + strand at 4357.303 kb on - strand at 4357.303 kb on - strand at 4357.303 kb on - strand at 4357.318 kb on + strand at 4357.595 kb on + strand, within ABID97_RS21105 at 4357.595 kb on + strand, within ABID97_RS21105 at 4357.706 kb on + strand, within ABID97_RS21105 at 4357.706 kb on + strand, within ABID97_RS21105 at 4357.706 kb on + strand, within ABID97_RS21105 at 4357.706 kb on + strand, within ABID97_RS21105 at 4358.322 kb on + strand, within ABID97_RS21110 at 4358.322 kb on + strand, within ABID97_RS21110 at 4358.322 kb on + strand, within ABID97_RS21110 at 4358.455 kb on - strand, within ABID97_RS21110 at 4358.667 kb on + strand, within ABID97_RS21110 at 4358.736 kb on + strand, within ABID97_RS21110 at 4358.989 kb on + strand, within ABID97_RS21115 at 4358.990 kb on - strand, within ABID97_RS21115 at 4359.548 kb on + strand, within ABID97_RS21120
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 4,357,302 + +3.1 4,357,303 - -0.2 4,357,303 - -0.7 4,357,303 - +3.1 4,357,318 + -0.2 4,357,595 + ABID97_RS21105 0.34 +0.0 4,357,595 + ABID97_RS21105 0.34 +0.3 4,357,706 + ABID97_RS21105 0.48 -0.9 4,357,706 + ABID97_RS21105 0.48 -0.0 4,357,706 + ABID97_RS21105 0.48 -1.2 4,357,706 + ABID97_RS21105 0.48 -1.0 4,358,322 + ABID97_RS21110 0.26 -0.6 4,358,322 + ABID97_RS21110 0.26 -0.2 4,358,322 + ABID97_RS21110 0.26 -0.8 4,358,455 - ABID97_RS21110 0.46 +0.5 4,358,667 + ABID97_RS21110 0.79 +1.9 4,358,736 + ABID97_RS21110 0.89 -0.7 4,358,989 + ABID97_RS21115 0.25 +0.5 4,358,990 - ABID97_RS21115 0.25 -0.4 4,359,548 + ABID97_RS21120 0.11 -0.2
Or see this region's nucleotide sequence