Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18905

Experiment: L-Alanine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS18895 and ABID97_RS18900 are separated by 133 nucleotidesABID97_RS18900 and ABID97_RS18905 are separated by 92 nucleotidesABID97_RS18905 and ABID97_RS18910 are separated by 17 nucleotidesABID97_RS18910 and ABID97_RS18915 are separated by 87 nucleotides ABID97_RS18895: ABID97_RS18895 - tannase/feruloyl esterase family alpha/beta hydrolase, at 3,892,424 to 3,894,040 _RS18895 ABID97_RS18900: ABID97_RS18900 - Crp/Fnr family transcriptional regulator, at 3,894,174 to 3,894,896 _RS18900 ABID97_RS18905: ABID97_RS18905 - NAD(P)H-binding protein, at 3,894,989 to 3,895,636 _RS18905 ABID97_RS18910: ABID97_RS18910 - NIPSNAP family protein, at 3,895,654 to 3,896,355 _RS18910 ABID97_RS18915: ABID97_RS18915 - zinc-binding dehydrogenase, at 3,896,443 to 3,897,393 _RS18915 Position (kb) 3894 3895 3896Strain fitness (log2 ratio) -1 0 1 2at 3894.018 kb on + strandat 3894.117 kb on - strandat 3894.385 kb on + strand, within ABID97_RS18900at 3894.476 kb on - strand, within ABID97_RS18900at 3894.601 kb on + strand, within ABID97_RS18900at 3895.630 kb on + strandat 3895.631 kb on - strandat 3896.184 kb on - strand, within ABID97_RS18910at 3896.333 kb on + strandat 3896.348 kb on + strandat 3896.367 kb on - strandat 3896.410 kb on - strandat 3896.410 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
remove
3,894,018 + +0.5
3,894,117 - +1.5
3,894,385 + ABID97_RS18900 0.29 -0.1
3,894,476 - ABID97_RS18900 0.42 +0.3
3,894,601 + ABID97_RS18900 0.59 +0.2
3,895,630 + +0.1
3,895,631 - -0.3
3,896,184 - ABID97_RS18910 0.75 +2.1
3,896,333 + -0.1
3,896,348 + +0.8
3,896,367 - +1.0
3,896,410 - -0.2
3,896,410 - -0.2

Or see this region's nucleotide sequence