Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18895 and ABID97_RS18900 are separated by 133 nucleotides ABID97_RS18900 and ABID97_RS18905 are separated by 92 nucleotides ABID97_RS18905 and ABID97_RS18910 are separated by 17 nucleotides ABID97_RS18910 and ABID97_RS18915 are separated by 87 nucleotides
ABID97_RS18895: ABID97_RS18895 - tannase/feruloyl esterase family alpha/beta hydrolase, at 3,892,424 to 3,894,040
_RS18895
ABID97_RS18900: ABID97_RS18900 - Crp/Fnr family transcriptional regulator, at 3,894,174 to 3,894,896
_RS18900
ABID97_RS18905: ABID97_RS18905 - NAD(P)H-binding protein, at 3,894,989 to 3,895,636
_RS18905
ABID97_RS18910: ABID97_RS18910 - NIPSNAP family protein, at 3,895,654 to 3,896,355
_RS18910
ABID97_RS18915: ABID97_RS18915 - zinc-binding dehydrogenase, at 3,896,443 to 3,897,393
_RS18915
Position (kb)
3894
3895
3896 Strain fitness (log2 ratio)
-1
0
1
2 at 3894.018 kb on + strand at 3894.117 kb on - strand at 3894.385 kb on + strand, within ABID97_RS18900 at 3894.476 kb on - strand, within ABID97_RS18900 at 3894.601 kb on + strand, within ABID97_RS18900 at 3895.630 kb on + strand at 3895.631 kb on - strand at 3896.184 kb on - strand, within ABID97_RS18910 at 3896.333 kb on + strand at 3896.348 kb on + strand at 3896.367 kb on - strand at 3896.410 kb on - strand at 3896.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,894,018 + +0.5 3,894,117 - +1.5 3,894,385 + ABID97_RS18900 0.29 -0.1 3,894,476 - ABID97_RS18900 0.42 +0.3 3,894,601 + ABID97_RS18900 0.59 +0.2 3,895,630 + +0.1 3,895,631 - -0.3 3,896,184 - ABID97_RS18910 0.75 +2.1 3,896,333 + -0.1 3,896,348 + +0.8 3,896,367 - +1.0 3,896,410 - -0.2 3,896,410 - -0.2
Or see this region's nucleotide sequence